Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CDG55_RS02475 Genome accession   NZ_CP028561
Coordinates   262206..262733 (+) Length   175 a.a.
NCBI ID   WP_087535968.1    Uniprot ID   A0A2R4TH55
Organism   Acinetobacter sp. WCHA45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257206..267733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS02460 (CDG55_02460) comM 259782..260840 (+) 1059 WP_087535965.1 pilus assembly protein PilM Machinery gene
  CDG55_RS02465 (CDG55_02465) pilN 260840..261463 (+) 624 WP_087535966.1 PilN domain-containing protein Machinery gene
  CDG55_RS02470 (CDG55_02470) comO 261460..262206 (+) 747 WP_087535967.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG55_RS02475 (CDG55_02475) pilP 262206..262733 (+) 528 WP_087535968.1 pilus assembly protein PilP Machinery gene
  CDG55_RS02480 (CDG55_02480) pilQ 262794..264938 (+) 2145 WP_162620847.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG55_RS02485 (CDG55_02485) aroK 264949..265515 (+) 567 WP_087535970.1 shikimate kinase AroK -
  CDG55_RS02490 (CDG55_02490) aroB 265540..266622 (+) 1083 WP_087535971.1 3-dehydroquinate synthase -
  CDG55_RS02495 (CDG55_02495) - 266642..267508 (+) 867 WP_087535972.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19373.53 Da        Isoelectric Point: 8.8203

>NTDB_id=285502 CDG55_RS02475 WP_087535968.1 262206..262733(+) (pilP) [Acinetobacter sp. WCHA45]
MNNYKIFLGLIFAVGLVGCDSRIDAVNQQMAEIRNQPPLPIEPAPIFTPVPLFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALEALNMKGSMRGKQNDTIALIQTPDGQIERVQVGSYLGMNQGRVVKISPTQIDLIEIVPDGREG
YVERPRTLVLIGPAQ

Nucleotide


Download         Length: 528 bp        

>NTDB_id=285502 CDG55_RS02475 WP_087535968.1 262206..262733(+) (pilP) [Acinetobacter sp. WCHA45]
ATGAATAATTATAAAATTTTCCTGGGATTGATATTCGCTGTTGGATTGGTCGGGTGTGATTCCCGTATTGATGCAGTCAA
TCAGCAGATGGCAGAAATTCGCAATCAGCCACCTTTACCGATTGAACCTGCACCTATATTTACACCTGTACCATTATTTA
ACTATGCGGCACATCAGTTAAAAAGCCCGTTTATGCCAAGTTCTCTGGCTGCTGAACTTAAGATTATGGCAGGTAAGCGT
GTTTATCCTAATTTTAATCGTCAGCCACAGCCATTAGAGAGTTATGCTCTTGAGGCCTTGAATATGAAAGGTAGTATGCG
TGGTAAGCAAAATGACACGATCGCCTTGATTCAAACACCAGATGGTCAGATTGAACGTGTACAGGTTGGTAGTTATTTGG
GTATGAACCAAGGGCGTGTAGTTAAAATTAGCCCTACACAAATTGATTTAATAGAAATTGTGCCAGATGGGCGAGAGGGT
TATGTGGAAAGGCCTAGAACACTCGTTTTAATTGGACCAGCACAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4TH55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

82.184

99.429

0.817
  comL Acinetobacter baylyi ADP1

70.52

98.857

0.697

Multiple sequence alignment