Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SK637_RS01050 | Genome accession | NZ_CP028415 |
| Coordinates | 211519..212472 (+) | Length | 317 a.a. |
| NCBI ID | WP_033688040.1 | Uniprot ID | - |
| Organism | Streptococcus mitis strain SK637 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 206519..217472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SK637_RS01005 (SK637_00200) | - | 206690..207055 (+) | 366 | WP_033688032.1 | DUF1033 family protein | - |
| SK637_RS01010 (SK637_00201) | comGA/cglA/cilD | 207131..208072 (+) | 942 | WP_033688033.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SK637_RS01015 (SK637_00202) | comGB/cglB | 208020..209036 (+) | 1017 | WP_080710441.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SK637_RS01020 (SK637_00203) | comGC/cglC | 209038..209364 (+) | 327 | WP_033688035.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SK637_RS01025 (SK637_00204) | comGD/cglD | 209357..209761 (+) | 405 | WP_000588010.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SK637_RS01030 (SK637_00205) | comGE/cglE | 209724..210026 (+) | 303 | WP_272898261.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SK637_RS01035 (SK637_00206) | comGF/cglF | 209989..210450 (+) | 462 | WP_033688037.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SK637_RS01040 (SK637_00207) | comGG/cglG | 210428..210838 (+) | 411 | WP_033688038.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SK637_RS01045 (SK637_00208) | - | 210871..211458 (+) | 588 | WP_033688039.1 | class I SAM-dependent methyltransferase | - |
| SK637_RS01050 (SK637_00209) | comYH | 211519..212472 (+) | 954 | WP_033688040.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SK637_RS01055 (SK637_00210) | - | 212522..213712 (+) | 1191 | WP_033688041.1 | acetate kinase | - |
| SK637_RS01060 (SK637_00211) | rnpA | 213862..214233 (+) | 372 | WP_033688042.1 | ribonuclease P protein component | - |
| SK637_RS01065 (SK637_00212) | - | 214208..215032 (+) | 825 | WP_201798902.1 | membrane protein insertase YidC | - |
| SK637_RS01070 (SK637_00213) | jag | 215050..216036 (+) | 987 | WP_000260006.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SK637_RS01080 (SK637_00214) | - | 216193..216828 (+) | 636 | WP_033688044.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35673.86 Da Isoelectric Point: 4.2706
>NTDB_id=284680 SK637_RS01050 WP_033688040.1 211519..212472(+) (comYH) [Streptococcus mitis strain SK637]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQIKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLVSMISLPENLFANAKQSKTIFILQKKSEIAVEPFIYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQIKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLVSMISLPENLFANAKQSKTIFILQKKSEIAVEPFIYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=284680 SK637_RS01050 WP_033688040.1 211519..212472(+) (comYH) [Streptococcus mitis strain SK637]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATTCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAAATCAGATCAAAGAGAACAATC
AGGCCCTTAAACGCTTAGCGCTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCCGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAGGAGTTGTTTAA
AGAGGAGGAAATCACTATCCTCGAAATGGGGTCTGGAATGGGGATTCTGGGCGCAACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAGCATACTTACGCCCATCACTTGCTCA
TGGAACAAGGCCTTAAGTATCTCAAGTCAGATGGATACGCTATTTTTCTCGCTCCAAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTGTTGAAAGGTTGGTTGAAAGAAGAAGCAAGTCTGGTTTCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTATTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATTCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAAATCAGATCAAAGAGAACAATC
AGGCCCTTAAACGCTTAGCGCTTCGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCCGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAGGAGTTGTTTAA
AGAGGAGGAAATCACTATCCTCGAAATGGGGTCTGGAATGGGGATTCTGGGCGCAACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAGCATACTTACGCCCATCACTTGCTCA
TGGAACAAGGCCTTAAGTATCTCAAGTCAGATGGATACGCTATTTTTCTCGCTCCAAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTGTTGAAAGGTTGGTTGAAAGAAGAAGCAAGTCTGGTTTCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTATTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.952 |
98.738 |
0.543 |
| comYH | Streptococcus mutans UA159 |
54.633 |
98.738 |
0.539 |