Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EGY18_RS05960 Genome accession   NZ_CP033771
Coordinates   1253332..1253661 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248332..1258661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS05945 (EGY18_05920) uvrB 1249719..1251731 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  EGY18_RS05950 (EGY18_05925) - 1251919..1253115 (+) 1197 WP_016852642.1 amino acid aminotransferase -
  EGY18_RS05960 (EGY18_05935) comEA/comE1 1253332..1253661 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  EGY18_RS05965 (EGY18_05940) - 1253852..1255849 (-) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  EGY18_RS05970 (EGY18_05945) - 1256047..1257084 (-) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  EGY18_RS05975 (EGY18_05950) - 1257084..1258046 (-) 963 WP_016253165.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=284672 EGY18_RS05960 WP_003104586.1 1253332..1253661(-) (comEA/comE1) [Pseudomonas aeruginosa strain FDAARGOS_532]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=284672 EGY18_RS05960 WP_003104586.1 1253332..1253661(-) (comEA/comE1) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment