Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM12261_RS01510 Genome accession   NZ_CP028414
Coordinates   284712..286700 (+) Length   662 a.a.
NCBI ID   WP_000749582.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 279712..291700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS01475 (SM12261_0289) - 280103..280333 (+) 231 WP_000250399.1 DUF1146 family protein -
  SM12261_RS01480 (SM12261_0290) murA 280357..281640 (+) 1284 WP_000411901.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SM12261_RS01485 (SM12261_0291) - 281633..281821 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  SM12261_RS01490 (SM12261_0292) endA 281860..282683 (+) 824 Protein_244 DNA-entry nuclease EndA -
  SM12261_RS01500 (SM12261_0294) - 282950..284281 (+) 1332 WP_000390033.1 hemolysin family protein -
  SM12261_RS01510 (SM12261_0296) amiA3 284712..286700 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  SM12261_RS01515 (SM12261_0297) amiC 286767..288263 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  SM12261_RS01520 (SM12261_0298) amiD 288263..289189 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SM12261_RS01525 (SM12261_0299) amiE 289198..290265 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  SM12261_RS01530 (SM12261_0300) amiF 290276..291202 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72530.86 Da        Isoelectric Point: 4.9296

>NTDB_id=284624 SM12261_RS01510 WP_000749582.1 284712..286700(+) (amiA3) [Streptococcus mitis NCTC 12261]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKSVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=284624 SM12261_RS01510 WP_000749582.1 284712..286700(+) (amiA3) [Streptococcus mitis NCTC 12261]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTCTATCAAACAGATCCAGAAACTTTGGATTATATCGTCAGCA
ATATCGATTCAACATCATTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACTTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACATATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAGGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCACTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACCGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTAAAATCTGTAACTCCAAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCCAAAGGTTT
TGCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTTAAAGATA
ACATTTACTTTAATGAACCAGGAGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAATCATACTGCC
AAAACAAGTGATGCTCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCTGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACATTCGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCAGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCCAAATCAAGTCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCCTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAGCAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCGGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGCCTTTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTGGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCTGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAAAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.819

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.518

100

0.547
  amiA Streptococcus salivarius strain HSISS4

53.916

100

0.541

Multiple sequence alignment