Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SM12261_RS01520 Genome accession   NZ_CP028414
Coordinates   288263..289189 (+) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus mitis NCTC 12261     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 283263..294189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS01510 (SM12261_0296) amiA3 284712..286700 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  SM12261_RS01515 (SM12261_0297) amiC 286767..288263 (+) 1497 WP_000759915.1 ABC transporter permease Regulator
  SM12261_RS01520 (SM12261_0298) amiD 288263..289189 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SM12261_RS01525 (SM12261_0299) amiE 289198..290265 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  SM12261_RS01530 (SM12261_0300) amiF 290276..291202 (+) 927 WP_001291284.1 ATP-binding cassette domain-containing protein Regulator
  SM12261_RS01540 (SM12261_0301) - 291606..292484 (-) 879 WP_001049302.1 LysR family transcriptional regulator -
  SM12261_RS01545 (SM12261_0302) - 292612..292962 (-) 351 WP_000208711.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=284626 SM12261_RS01520 WP_000103691.1 288263..289189(+) (amiD) [Streptococcus mitis NCTC 12261]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=284626 SM12261_RS01520 WP_000103691.1 288263..289189(+) (amiD) [Streptococcus mitis NCTC 12261]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCTATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAGAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTAATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTGACGACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACTCTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCAATTACCGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment