Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Aba7835_RS11085 Genome accession   NZ_CP033243
Coordinates   2259208..2259843 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain 7835     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254208..2264843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aba7835_RS11060 (Aba7835_11190) - 2254264..2255244 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  Aba7835_RS11065 (Aba7835_11195) kdsB 2255256..2256017 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Aba7835_RS11070 (Aba7835_11200) lpxK 2256027..2257037 (-) 1011 WP_000050466.1 tetraacyldisaccharide 4'-kinase -
  Aba7835_RS11075 (Aba7835_11205) msbA 2257040..2258767 (-) 1728 WP_001070723.1 lipid A export permease/ATP-binding protein MsbA -
  Aba7835_RS11080 (Aba7835_11210) - 2258764..2259192 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  Aba7835_RS11085 (Aba7835_11215) exbB 2259208..2259843 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Aba7835_RS11090 (Aba7835_11220) - 2259893..2260780 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  Aba7835_RS11095 (Aba7835_11225) - 2260777..2261559 (-) 783 WP_000057217.1 ParA family protein -
  Aba7835_RS11100 (Aba7835_11230) rsmG 2261581..2262213 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  Aba7835_RS11105 (Aba7835_11235) murU 2262301..2262990 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  Aba7835_RS11110 (Aba7835_11240) - 2262990..2264003 (-) 1014 WP_001097113.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=282835 Aba7835_RS11085 WP_000264037.1 2259208..2259843(-) (exbB) [Acinetobacter baumannii strain 7835]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=282835 Aba7835_RS11085 WP_000264037.1 2259208..2259843(-) (exbB) [Acinetobacter baumannii strain 7835]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTGTTAATGAATGATGGTAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCCATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment