Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9Y32_RS13465 Genome accession   NZ_CP033218
Coordinates   2627461..2628210 (+) Length   249 a.a.
NCBI ID   WP_142782479.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2622461..2633210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS13450 (D9Y32_13470) - 2622643..2622834 (-) 192 WP_003184058.1 hypothetical protein -
  D9Y32_RS13455 (D9Y32_13475) - 2623296..2625938 (+) 2643 WP_142782478.1 valine--tRNA ligase -
  D9Y32_RS13460 (D9Y32_13480) - 2626020..2627318 (+) 1299 WP_009329287.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D9Y32_RS13465 (D9Y32_13485) comC 2627461..2628210 (+) 750 WP_142782479.1 A24 family peptidase Machinery gene
  D9Y32_RS13470 (D9Y32_13490) - 2628414..2629445 (+) 1032 WP_142782480.1 SPOR domain-containing protein -
  D9Y32_RS13475 (D9Y32_13495) - 2629599..2630171 (+) 573 WP_003184048.1 nucleoside triphosphate pyrophosphatase -
  D9Y32_RS13480 (D9Y32_13500) ysxA/radC 2630226..2630900 (+) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  D9Y32_RS13485 (D9Y32_13505) - 2630988..2631998 (+) 1011 WP_003184042.1 rod shape-determining protein -
  D9Y32_RS13490 (D9Y32_13510) mreC 2632029..2632937 (+) 909 WP_003184040.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26954.53 Da        Isoelectric Point: 8.7373

>NTDB_id=282723 D9Y32_RS13465 WP_142782479.1 2627461..2628210(+) (comC) [Bacillus licheniformis strain TCCC 11148]
MFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFISAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=282723 D9Y32_RS13465 WP_142782479.1 2627461..2628210(+) (comC) [Bacillus licheniformis strain TCCC 11148]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTCCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCATCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

97.189

0.47

Multiple sequence alignment