Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D0784_RS13395 | Genome accession | NZ_CP033134 |
| Coordinates | 2864414..2864851 (+) | Length | 145 a.a. |
| NCBI ID | WP_122020021.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain 170502 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2859414..2869851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0784_RS13375 (D0784_13370) | pdhR | 2861446..2862213 (-) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| D0784_RS13380 (D0784_13375) | ampD | 2862618..2863169 (-) | 552 | WP_122020019.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D0784_RS13385 (D0784_13380) | nadC | 2863262..2864149 (+) | 888 | WP_077262200.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D0784_RS13395 (D0784_13390) | pilA | 2864414..2864851 (+) | 438 | WP_122020021.1 | type IV pilin protein | Machinery gene |
| D0784_RS13400 (D0784_13395) | pilB | 2864864..2866549 (+) | 1686 | WP_038891992.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D0784_RS13405 (D0784_13400) | pilC | 2866584..2867807 (+) | 1224 | WP_012128878.1 | type II secretion system F family protein | Machinery gene |
| D0784_RS13410 (D0784_13405) | pilD | 2867880..2868749 (+) | 870 | WP_012128879.1 | prepilin peptidase | Machinery gene |
| D0784_RS13415 (D0784_13410) | coaE | 2868750..2869364 (+) | 615 | WP_045369833.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 14968.00 Da Isoelectric Point: 8.4751
>NTDB_id=282289 D0784_RS13395 WP_122020021.1 2864414..2864851(+) (pilA) [Vibrio campbellii strain 170502]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVAKSEAATAAATVRGLLTNIDMYQQEVGSFPTDITKVGGTQT
MNAFGSIALASTTSGGTATFTFTDGSLKTGGAGNNAATIIYTKDNSTGWSCTHTIQDTSVVPSGC
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKSYVAKSEAATAAATVRGLLTNIDMYQQEVGSFPTDITKVGGTQT
MNAFGSIALASTTSGGTATFTFTDGSLKTGGAGNNAATIIYTKDNSTGWSCTHTIQDTSVVPSGC
Nucleotide
Download Length: 438 bp
>NTDB_id=282289 D0784_RS13395 WP_122020021.1 2864414..2864851(+) (pilA) [Vibrio campbellii strain 170502]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTAGTGGCAATCATTGGTGTGTT
GTCTGCAGTTGCTATACCTGCCTACAAAAGTTACGTAGCTAAATCTGAAGCAGCCACTGCTGCTGCAACTGTTAGAGGAC
TGTTGACAAATATTGATATGTATCAGCAAGAAGTTGGTAGTTTCCCTACAGACATTACAAAAGTAGGCGGCACACAAACA
ATGAATGCTTTTGGCTCAATAGCATTGGCATCAACAACTAGTGGCGGTACTGCTACTTTCACATTTACAGACGGCTCGTT
AAAAACAGGCGGTGCTGGCAATAATGCAGCAACAATTATATATACCAAAGATAATTCAACAGGCTGGAGCTGTACTCATA
CAATCCAAGATACTTCCGTTGTGCCTTCCGGTTGTTGA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTAGTGGCAATCATTGGTGTGTT
GTCTGCAGTTGCTATACCTGCCTACAAAAGTTACGTAGCTAAATCTGAAGCAGCCACTGCTGCTGCAACTGTTAGAGGAC
TGTTGACAAATATTGATATGTATCAGCAAGAAGTTGGTAGTTTCCCTACAGACATTACAAAAGTAGGCGGCACACAAACA
ATGAATGCTTTTGGCTCAATAGCATTGGCATCAACAACTAGTGGCGGTACTGCTACTTTCACATTTACAGACGGCTCGTT
AAAAACAGGCGGTGCTGGCAATAATGCAGCAACAATTATATATACCAAAGATAATTCAACAGGCTGGAGCTGTACTCATA
CAATCCAAGATACTTCCGTTGTGCCTTCCGGTTGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
45.638 |
100 |
0.469 |
| pilA | Pseudomonas aeruginosa PAK |
43.046 |
100 |
0.448 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.428 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.428 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.428 |
| comP | Acinetobacter baylyi ADP1 |
37.931 |
100 |
0.379 |