Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPC_RS03385 Genome accession   NC_009494
Coordinates   716709..718220 (-) Length   503 a.a.
NCBI ID   WP_011945756.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 711709..723220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS03350 (LPC_2719) - 711716..712387 (-) 672 WP_011213193.1 TIGR00153 family protein -
  LPC_RS03355 (LPC_2718) - 712578..713342 (+) 765 WP_010946322.1 hypothetical protein -
  LPC_RS03360 (LPC_2717) - 713635..714198 (+) 564 WP_010946323.1 YqgE/AlgH family protein -
  LPC_RS03365 (LPC_2716) ruvX 714191..714610 (+) 420 WP_041931963.1 Holliday junction resolvase RuvX -
  LPC_RS03370 (LPC_2715) - 714660..715553 (+) 894 WP_011945753.1 aspartate carbamoyltransferase catalytic subunit -
  LPC_RS03375 (LPC_2714) - 715609..715935 (-) 327 WP_011945754.1 hypothetical protein -
  LPC_RS03380 (LPC_2713) - 716219..716605 (-) 387 WP_011945755.1 hypothetical protein -
  LPC_RS03385 (LPC_2712) comM 716709..718220 (-) 1512 WP_011945756.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPC_RS03390 (LPC_2711) ubiK 718292..718546 (-) 255 WP_011214812.1 ubiquinone biosynthesis accessory factor UbiK -
  LPC_RS03395 (LPC_2710) - 718691..719029 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  LPC_RS03400 (LPC_2709) - 719039..719620 (-) 582 WP_011945757.1 5-formyltetrahydrofolate cyclo-ligase -
  LPC_RS03405 (LPC_2708) - 719867..720052 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  LPC_RS03410 (LPC_2707) - 720066..720881 (+) 816 WP_011945758.1 aminotransferase class IV -
  LPC_RS03415 (LPC_2706) - 720908..721591 (-) 684 WP_011945759.1 TVP38/TMEM64 family protein -
  LPC_RS03420 (LPC_2705) - 721746..722468 (+) 723 WP_011945760.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54983.60 Da        Isoelectric Point: 7.9481

>NTDB_id=28218 LPC_RS03385 WP_011945756.1 716709..718220(-) (comM) [Legionella pneumophila str. Corby]
MNLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQYLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLLNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
THLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMSE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=28218 LPC_RS03385 WP_011945756.1 716709..718220(-) (comM) [Legionella pneumophila str. Corby]
ATGAATCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGCGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACGGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCAGAACAAATTCCTCTCACCAACCTTGCAAATCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCCGCTCATAAAGACAATC
AATATCTTATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCACCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTAAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTACCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGCGCACCACATCATACTGCTTCACCTGTCGCATTAGTCGGAGGAGGCAACCCGCCGAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTACTGGAGACACTTAGAGAACCTTTGGAG
TCAGGGCATATTTGCATTTCTAGGGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCTAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCATTTAGAAAAACAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAGTGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

97.217

100

0.972
  comM Legionella pneumophila strain ERS1305867

97.217

100

0.972
  comM Haemophilus influenzae Rd KW20

50

100

0.505
  comM Vibrio cholerae strain A1552

50.298

100

0.503
  comM Vibrio campbellii strain DS40M4

49.505

100

0.497
  comM Glaesserella parasuis strain SC1401

47.535

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.169

99.006

0.417

Multiple sequence alignment