Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C4X49_RS16715 Genome accession   NZ_CP028138
Coordinates   3399854..3401992 (-) Length   712 a.a.
NCBI ID   WP_000501438.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain NCIMB 8209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394854..3406992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4X49_RS16700 (C4X49_16690) - 3397271..3398146 (-) 876 WP_002132391.1 hypothetical protein -
  C4X49_RS16705 (C4X49_16695) aroB 3398162..3399244 (-) 1083 WP_038405376.1 3-dehydroquinate synthase -
  C4X49_RS16710 (C4X49_16700) aroK 3399273..3399842 (-) 570 WP_000643712.1 shikimate kinase AroK -
  C4X49_RS16715 (C4X49_16705) pilQ 3399854..3401992 (-) 2139 WP_000501438.1 type IV pilus secretin PilQ family protein Machinery gene
  C4X49_RS16720 (C4X49_16710) - 3402013..3402507 (-) 495 WP_001003818.1 IS630 family transposase -
  C4X49_RS16725 (C4X49_16715) - 3402555..3402860 (-) 306 WP_000122230.1 IS630 transposase-related protein -
  C4X49_RS16730 (C4X49_16720) pilP 3402970..3403497 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  C4X49_RS16735 (C4X49_16725) pilO 3403508..3404248 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  C4X49_RS16740 (C4X49_16730) pilN 3404245..3404886 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  C4X49_RS16745 (C4X49_16735) pilM 3404886..3405944 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76743.96 Da        Isoelectric Point: 5.9755

>NTDB_id=281554 C4X49_RS16715 WP_000501438.1 3399854..3401992(-) (pilQ) [Acinetobacter baumannii strain NCIMB 8209]
MGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKISVATNEASS
VDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVVVDLLGSNTP
VDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSSGSYEYMAYQAENKLTISLKRPQDKN
VTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNLDKRRNGNVI
WIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNLNTGVDSLGN
NVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNN
LLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPK
VMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPNGELILNKNN
INTNVLVDNGETVILGGVFEQTTMNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=281554 C4X49_RS16715 WP_000501438.1 3399854..3401992(-) (pilQ) [Acinetobacter baumannii strain NCIMB 8209]
ATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCATGACCAATATTGTACCAATGCAAATTGC
AGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCACAAGCTTACCAACTTGAAAATCCTTCAC
GTTTAATACTTGATTTTGATAAGGCTCAGCAAGGTTTAAAACAGTCTAAAATTAGTGTTGCAACTAATGAGGCAAGTTCT
GTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAACCTAAAAGATGCTGGAGCATTTACAACACGAGTAGA
AGGTAATACCTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGCTACCTGTGGTCTCAGCACAACCACAGG
GAGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGCCTAGTTGTTGTAGATCTTTTAGGAAGTAATACGCCT
GTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAAAATCCCGACACATTTAGCACGTCGCTT
AAATGTAAATGATTTTGCAACCCCCGTTTCAAGTATCGATGCTTATAATGATAAAGGGGTTGGTGTAATAACTATCCAGT
CCTCTGGTAGCTATGAATATATGGCATATCAGGCGGAGAATAAGCTCACGATCAGTTTGAAACGTCCCCAAGATAAAAAT
GTTACATCTTTATATAAAACGCCGAATTATTCAGGAAATAAACTTTCATTAGACTTCCAAGATATTGAAGTACGTCGTGT
GTTGCAATTACTTGCTGATTTTACAGGCATCAATATGGTAGCTGCCGATAGTGTACAAGGTAATATCACACTACGTTTAA
AAGATGTACCTTGGGATCAGGCGCTTGATATTATTTTAAAAACTAAAAATCTCGATAAACGCCGTAACGGCAATGTGATT
TGGATTGCTCCAGTTGCAGAATTGATTAAAGCGGAAGAAGAAGAAGCGAAAGCTGTTGCACAAAGTGTCAAACTTGCACC
CTTACAGACTGAGTATATTCAACTGAAGTATGCTAAAGCTGGCGATATTATGGGTCTCATTACACAAGGCTCAAATAATA
GTAATGGCTTACAACATACTTCTGGTGGAGGGACTTCAACTTCAACCAATTTAAATACTGGAGTTGATAGTCTAGGCAAT
AATGTGGGTAGTTTGCTTAGCCCGCGTGGCACTATTACTCAAGATGACCGAACCAATACTCTTATTATTAATGATACTGC
TCAGTCAATTGATCAAATTCGGAAAATGATTGACCTACTTGATGTGCAAGTTAAACAGGTTATGGTTGAAGCACGTATTG
TGAGAGCCTCTACGTCCTTTACCAAAGAACTTGGTGTGAAGTGGGGCATTCTGTCGCAAGGTATTACCAATAACAACAAT
TTGCTGGTTGGCGGTAGTGAAACAACTTTATGGAATTTACGCGAACCTAAAAAAGATGAAACTACAGGTGGGTATAAATA
TACGATTGAGCGCCCAGATAACTTAAACGTGGATTTAGGAGTTTCTAATCCTGCAGGAAGTATTGCTTTTGGCTTAATTA
GTATGTCTGACTTTATGTTAGATCTTGAATTGTCTGCTTTACAAGCGGATGGTTATGGTGAGGTTATTTCTACCCCTAAA
GTCATGACTGCCGATAAACAAACAGCGAAAGTTGCAACTGGTCAACAAGTTCCATATCAATCTACAACTAACTCTGCAGC
AGGTTCAACTGCTACAACATCTTTTAAAGATGCTTTGCTGAGTTTAAATGTGACACCAAGTATTACACCTGATGGTAAGA
TTCAAATGAAGTTGGATATTTCTAAGGATTCTGTAGCGGGTGCGGCTCCAAATGGAGAGTTGATTTTAAATAAAAATAAT
ATCAACACCAATGTATTGGTAGATAATGGCGAAACTGTCATTTTGGGTGGTGTTTTTGAGCAAACAACTATGAATTCACA
AACCAAAGTTCCTTTCTTTGGTGATATTCCTGTTGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAG
AGTTGCTGATTTTCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(30-112)

Bacterial type II/III secretion system short domain (Secretin_N)

(351-446)

Secretin and TonB N terminus short domain (STN)

(282-324)

Bacterial type II and III secretion system protein (Secretin)

(546-704)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

100

100

1
  pilQ Acinetobacter baumannii strain A118

99.86

100

0.999
  comQ Acinetobacter baylyi ADP1

75.63

100

0.758
  pilQ Pseudomonas aeruginosa PAK

40.42

100

0.406

Multiple sequence alignment