Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   C4X49_RS16740 Genome accession   NZ_CP028138
Coordinates   3404245..3404886 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain NCIMB 8209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3399245..3409886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4X49_RS16710 (C4X49_16700) aroK 3399273..3399842 (-) 570 WP_000643712.1 shikimate kinase AroK -
  C4X49_RS16715 (C4X49_16705) pilQ 3399854..3401992 (-) 2139 WP_000501438.1 type IV pilus secretin PilQ family protein Machinery gene
  C4X49_RS16720 (C4X49_16710) - 3402013..3402507 (-) 495 WP_001003818.1 IS630 family transposase -
  C4X49_RS16725 (C4X49_16715) - 3402555..3402860 (-) 306 WP_000122230.1 IS630 transposase-related protein -
  C4X49_RS16730 (C4X49_16720) pilP 3402970..3403497 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  C4X49_RS16735 (C4X49_16725) pilO 3403508..3404248 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  C4X49_RS16740 (C4X49_16730) pilN 3404245..3404886 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  C4X49_RS16745 (C4X49_16735) pilM 3404886..3405944 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  C4X49_RS16750 (C4X49_16740) ponA 3406106..3408661 (+) 2556 WP_000736674.1 penicillin-binding protein PBP1a -
  C4X49_RS16755 (C4X49_16745) - 3408679..3409503 (-) 825 WP_102891621.1 putative RNA methyltransferase -
  C4X49_RS16760 (C4X49_16750) - 3409506..3409838 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=281557 C4X49_RS16740 WP_000201224.1 3404245..3404886(-) (pilN) [Acinetobacter baumannii strain NCIMB 8209]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=281557 C4X49_RS16740 WP_000201224.1 3404245..3404886(-) (pilN) [Acinetobacter baumannii strain NCIMB 8209]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACGGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment