Detailed information NTG0281387

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: C7V42_RS16595
• Genome accession: NZ_CP028127
• Coordinates: 3632293..3634023 (-)
• Length: 576 a.a.
• NCBI ID: WP_010363784.1
• Uniprot ID: A0AAE8JVL2
• Organism: Xanthomonas vasicola pv. vasculorum strain SAM119
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3627293..3639023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7V42_RS16585 (C7V42_16560)	-	3628489..3630102 (+)	1614	WP_010366203.1	HAMP domain-containing sensor histidine kinase	-
C7V42_RS16590 (C7V42_16565)	pilR	3630368..3631822 (+)	1455	WP_026112191.1	sigma-54 dependent transcriptional regulator	Regulator
C7V42_RS16595 (C7V42_16570)	pilB	3632293..3634023 (-)	1731	WP_010363784.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C7V42_RS16600 (C7V42_16575)	-	3634059..3635387 (-)	1329	Protein_3090	hypothetical protein	-
C7V42_RS16610 (C7V42_16585)	-	3636020..3637609 (-)	1590	WP_010363790.1	phosphoethanolamine transferase	-
C7V42_RS16615 (C7V42_16590)	pilA2	3637745..3638170 (-)	426	WP_010363792.1	pilin	Machinery gene

Sequence

Protein

• Length: 576 a.a.
• Molecular weight: 62845.91 Da
• Isoelectric Point: 5.6078

>NTDB_id=281387 C7V42_RS16595 WP_010363784.1 3632293..3634023(-) (pilB) [Xanthomonas vasicola pv. vasculorum strain SAM119]
MNSATTNLVGITGIARRLVQDGALEEAAARTAMEQAAAAKVPLPQWFSEKKLVSASQLAAANAVEFGMPLMDVSVFDANQ
NAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQSSNTSLGSSLGN
DDEEMGDLDVSTGDEDMGAGGDSGVDARGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVARAPV
KLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKL
FLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPD
IIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLPD
NALLAEGFTPEQIANMELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKA
SHGVTSLAEINRVTKD

Nucleotide

• Length: 1731 bp

>NTDB_id=281387 C7V42_RS16595 WP_010363784.1 3632293..3634023(-) (pilB) [Xanthomonas vasicola pv. vasculorum strain SAM119]
ATGAATTCAGCTACCACCAACCTCGTTGGCATCACTGGCATCGCTCGTCGCCTTGTGCAGGATGGCGCCTTGGAGGAAGC
CGCTGCGCGGACGGCGATGGAGCAGGCGGCCGCTGCCAAAGTGCCGCTGCCGCAGTGGTTTTCCGAGAAGAAGCTGGTGT
CGGCGTCGCAGCTGGCGGCAGCCAATGCCGTGGAATTCGGCATGCCGCTGATGGATGTGTCTGTGTTCGACGCTAACCAG
AACGCAGTCAAACTAGTCAGCGAGGAATTGCTCCAGAAGCACCAGGTACTGCCGCTGTTCAAGCGGGGCAACCGGTTGTT
CGTGGGAGTGAGCAACCCGACTCAGACCCGGGCACTGGATGACATCAAGTTCCACACCAATCTGGTGGTCGAGCCGATCC
TGGTCGACGAGGACCAGATTCGTCGCACCTTGGAACAATGGCAATCAAGTAATACTTCGCTTGGCTCGTCTTTGGGGAAC
GATGACGAGGAAATGGGAGATCTGGACGTCTCCACCGGCGACGAAGACATGGGCGCCGGCGGGGATTCCGGGGTCGATGC
CAGGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCTTCGGACATCC
ATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGGATCGATGGGCTGTTGAAGAACGTGGCCAGGGCGCCGGTG
AAGCTGAATCAGCGCATCGCAGCTCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGACGG
GCGCATCAAGCTCAACCTGTCTAAGACCAAGCAGATCGACTTTCGCGTGAGCACCTTGCCAACCCTGTTCGGCGAGAAGG
TGGTGCTGCGTATCCTGGACGCCAGCGCGGCCAAGCTCGGTATCGAGAAGCTGGGCTATGAGGCTGACCAGCAGAAGCTG
TTCCTGGACGCGATCCATAAGCCGTATGGCATGGTGCTGGTGACCGGGCCGACGGGCTCGGGTAAGACGGTGTCGCTGTA
TACGGCGCTGGGCATCCTCAACGACGAGACGCGGAACATTTCCACGGCAGAGGATCCGGTCGAAATTCGCTTGCCTGGCG
TCAATCAGGTGCAGCAGAACGTCAAGCGCGGCATGACCTTTGCCGCTGCGCTGCGTTCGTTCCTGCGTCAGGACCCGGAC
ATCATCATGGTCGGCGAAATCCGTGACCTGGAGACCGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCATATGGTGCT
GTCGACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGTCTGATGAATATGGGGATCGCGCCGTACAACATCACCT
CGTCGGTAACGTTGGTGATCGCGCAGCGTCTGGCGCGGCGTTTGTGCAACAACTGCAAGCGCAAGTCGACGTTGCCGGAC
AACGCATTGCTGGCGGAAGGTTTTACGCCCGAGCAAATCGCGAACATGGAGCTCTACGAGGCTGTGGGTTGCGACGAGTG
CACTGAAGGCTACAAGGGCCGTACCGGTATCTATCAGGTGATGCCGATGACCGACGAGATCGGCGCGATCGTGCTGGAAG
GCGGCAATGCGATGCAGATTGCCGAGGCGGCGCAGAAAATCGGTATCCGGGACTTGCGGCAGTCGGCGTTGATGAAGGCC
TCGCACGGCGTGACCAGCCTGGCTGAGATCAATCGGGTGACGAAGGATTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (49-151)

• Type II/IV secretion system protein (T2SSE) (200-467)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baylyi ADP1	55.556	100	0.556
pilB	Acinetobacter baumannii D1279779	56.338	98.611	0.556
pilB	Legionella pneumophila strain ERS1305867	52.289	98.611	0.516
pilF	Neisseria gonorrhoeae MS11	49.824	98.611	0.491
pilB	Vibrio cholerae strain A1552	48.87	99.826	0.488
pilB	Vibrio campbellii strain DS40M4	46.087	99.826	0.46
pilB	Vibrio parahaemolyticus RIMD 2210633	45.471	97.743	0.444