Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C7V42_RS16590 Genome accession   NZ_CP028127
Coordinates   3630368..3631822 (+) Length   484 a.a.
NCBI ID   WP_026112191.1    Uniprot ID   -
Organism   Xanthomonas vasicola pv. vasculorum strain SAM119     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3625368..3636822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7V42_RS16565 (C7V42_16540) - 3625368..3625670 (-) 303 WP_010366207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  C7V42_RS16570 (C7V42_16545) - 3625674..3626084 (-) 411 WP_017115424.1 DNA-binding protein -
  C7V42_RS16575 (C7V42_16550) sucD 3626187..3627062 (-) 876 WP_010366205.1 succinate--CoA ligase subunit alpha -
  C7V42_RS16580 (C7V42_16555) sucC 3627087..3628256 (-) 1170 WP_010366204.1 ADP-forming succinate--CoA ligase subunit beta -
  C7V42_RS16585 (C7V42_16560) - 3628489..3630102 (+) 1614 WP_010366203.1 HAMP domain-containing sensor histidine kinase -
  C7V42_RS16590 (C7V42_16565) pilR 3630368..3631822 (+) 1455 WP_026112191.1 sigma-54 dependent transcriptional regulator Regulator
  C7V42_RS16595 (C7V42_16570) pilB 3632293..3634023 (-) 1731 WP_010363784.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C7V42_RS16600 (C7V42_16575) - 3634059..3635387 (-) 1329 Protein_3090 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52559.30 Da        Isoelectric Point: 7.1092

>NTDB_id=281386 C7V42_RS16590 WP_026112191.1 3630368..3631822(+) (pilR) [Xanthomonas vasicola pv. vasculorum strain SAM119]
MGRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTDIARRYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LRGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGAASESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLTATPGSAAVEPREAVLDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=281386 C7V42_RS16590 WP_026112191.1 3630368..3631822(+) (pilR) [Xanthomonas vasicola pv. vasculorum strain SAM119]
TTGGGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCTTGGGCCGCATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAATGGCATCGAACTGGTCACCGACATCGCCAGGCGGTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGTGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCCCCACCGCCGCCGCCGGAACAGGCCAGCCGA
CTGCGCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACGATCGGCAAGGTCGCGCGCAGCCAGGCACCGGTTTACAT
CGTCGGCGAATCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TCCCGGTCAACTGCGGCGCCATTCCTGCCGAGCTGATGGAGAGCGAATTTTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCACACGGCGGCACGTTGTTTCTGGACGAAGTAGCAGAATTACCGCT
GCAGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGCCAGTGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACACACAAGGACCTGGGCGACTTGGTCTCCGACGGTCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTGATCGAACTACGCGTACCGCCGCTGCGCGAACGCGGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCGATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCGCTGGCCGAGGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCACCGCCACACCCGGCAGCGCTGCCGTCGAACCGCGCGAAGCTGT
CCTCGACATCGACCCCGCCTCGGCCGCCCTCCCCTCTTACATCGAGCAACTGGAACGCGCTGCAATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACCTTTCGGGCGCTGCGTTACAAGTTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

48.491

95.868

0.465

Multiple sequence alignment