Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   At1D1460_RS14550 Genome accession   NZ_CP032926
Coordinates   2853588..2855120 (+) Length   510 a.a.
NCBI ID   WP_121592402.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1460     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2848588..2860120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1460_RS14525 (At1D1460_27740) - 2848650..2849615 (+) 966 WP_003503830.1 sugar ABC transporter permease -
  At1D1460_RS14530 (At1D1460_27750) ugpE 2849626..2850468 (+) 843 WP_003503828.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  At1D1460_RS14535 (At1D1460_27760) - 2850479..2851579 (+) 1101 WP_003503827.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  At1D1460_RS14540 (At1D1460_27770) - 2851689..2852201 (+) 513 WP_060722816.1 cupin domain-containing protein -
  At1D1460_RS14545 (At1D1460_27780) gshB 2852445..2853404 (+) 960 WP_026363806.1 glutathione synthase -
  At1D1460_RS14550 (At1D1460_27790) comM 2853588..2855120 (+) 1533 WP_121592402.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  At1D1460_RS14555 (At1D1460_27800) cysK 2855234..2856202 (-) 969 WP_003503821.1 cysteine synthase A -
  At1D1460_RS14560 (At1D1460_27810) - 2856344..2856961 (-) 618 WP_035212607.1 LysE family translocator -
  At1D1460_RS14565 (At1D1460_27820) dut 2857105..2857575 (-) 471 WP_060722818.1 dUTP diphosphatase -
  At1D1460_RS14570 (At1D1460_27830) - 2857666..2859249 (+) 1584 WP_003503817.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53423.90 Da        Isoelectric Point: 8.5922

>NTDB_id=281243 At1D1460_RS14550 WP_121592402.1 2853588..2855120(+) (comM) [Agrobacterium tumefaciens strain 1D1460]
MVARVNTVAFQGIEGVPVEVQIMVAPGKVGIQIVGLPDKAVAESRERVQAALHASGLALPAKKVTVNLAPADLPKEGSHF
DLPIALGLMAALGAIPADMLGRYVVLGELNLDGTIGTVSGALPAAIGANALGKELICPAESGPEAAWAGASIDILAPRSL
IALANHFRGTQLLARPTPAIRANPVNLPDLADIKGQESARRALEVAAAGGHNLLMVGPPGSGKSMLAARLPSILPPLEVA
ELLEVSMVHSIAGQLSGGKLSDRRPFRTPHHSATMAALIGGGLRAKPGEASLAHHGVLFLDEFPEFSPQVLDALRQPLET
GECIIARANHRVSYPAEIQLVAAMNLCRCGMAGEPGFNCARGQRCVTDYQARISGPLLDRIDIRIDVPAVSAADLIRPVV
AEPSAVVAARVARARLAQQERYAAAGFTAIRTNARCTTTLIEKYAEPDASGLQLLRDAAERLKFSARGYHRILKVARTLA
DLDGKQTVGRIHVAEAVSYRIAGERLTAAA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=281243 At1D1460_RS14550 WP_121592402.1 2853588..2855120(+) (comM) [Agrobacterium tumefaciens strain 1D1460]
ATGGTGGCAAGGGTCAATACGGTTGCATTTCAGGGCATAGAGGGTGTGCCCGTCGAGGTGCAGATCATGGTCGCACCCGG
AAAGGTCGGCATCCAGATTGTCGGCCTGCCAGACAAGGCGGTGGCCGAAAGCCGCGAGAGGGTGCAGGCCGCCCTGCATG
CTTCGGGTCTGGCGCTGCCGGCGAAAAAAGTCACCGTCAATCTCGCGCCTGCGGATTTGCCCAAGGAAGGATCGCATTTT
GATCTTCCCATTGCGCTTGGCCTCATGGCTGCCTTGGGGGCGATACCGGCAGACATGCTGGGACGTTATGTGGTTCTCGG
CGAACTCAATCTTGATGGCACCATCGGTACGGTTTCGGGCGCCCTGCCGGCGGCTATCGGCGCCAATGCACTCGGCAAGG
AGCTGATCTGCCCGGCTGAAAGCGGGCCGGAAGCGGCCTGGGCCGGAGCCAGTATCGATATTCTCGCCCCGCGCAGTCTC
ATTGCACTCGCCAATCATTTTCGCGGCACACAGCTTCTCGCGCGCCCGACGCCCGCCATCCGCGCCAATCCGGTTAATCT
GCCTGATTTAGCTGACATCAAGGGACAGGAGAGTGCCCGGCGCGCGCTGGAGGTGGCCGCCGCTGGCGGCCATAATCTGC
TGATGGTCGGCCCACCCGGTTCGGGTAAATCCATGCTCGCAGCCCGCTTGCCTTCCATCCTGCCCCCGCTGGAAGTGGCG
GAGTTGCTGGAAGTGTCCATGGTCCATTCCATCGCCGGCCAATTGTCGGGTGGCAAGCTGTCGGACCGCAGGCCTTTCCG
CACGCCGCACCATTCCGCCACCATGGCGGCGCTGATCGGCGGAGGGCTGCGTGCCAAACCGGGCGAAGCTTCGCTTGCCC
ATCACGGCGTTCTTTTTCTGGATGAGTTCCCGGAATTTTCGCCGCAGGTGCTGGATGCGCTTCGCCAGCCGCTGGAAACG
GGCGAATGCATCATTGCGCGAGCCAATCACCGCGTCAGCTATCCGGCAGAAATCCAACTCGTTGCGGCCATGAACCTCTG
CAGGTGCGGCATGGCGGGAGAGCCGGGTTTCAACTGCGCCCGAGGCCAGCGCTGTGTAACCGATTATCAGGCCCGCATTT
CCGGACCGTTGCTAGACCGTATCGATATCCGCATCGACGTTCCCGCTGTCTCCGCCGCCGATCTCATTCGCCCCGTGGTG
GCCGAGCCGAGTGCGGTGGTGGCCGCCCGGGTCGCCCGGGCACGCCTTGCGCAGCAGGAACGCTACGCGGCGGCGGGATT
TACCGCCATTCGCACGAATGCTCGCTGCACGACGACCCTGATAGAAAAATATGCCGAGCCGGATGCGTCCGGGCTGCAAT
TGCTGCGCGATGCCGCCGAGCGGCTGAAGTTTTCCGCGCGCGGTTATCATCGCATTCTCAAGGTTGCCCGCACCCTGGCC
GATCTGGATGGCAAGCAGACGGTTGGCCGCATCCATGTGGCGGAAGCTGTGTCCTATCGTATCGCAGGGGAAAGGCTTAC
GGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

45.2

98.039

0.443
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

99.608

0.443
  comM Vibrio cholerae strain A1552

43.625

98.431

0.429
  comM Vibrio cholerae O1 biovar El Tor strain E7946

43.625

98.431

0.429
  comM Vibrio campbellii strain DS40M4

43.313

98.235

0.425
  comM Glaesserella parasuis strain SC1401

42.914

98.235

0.422
  comM Haemophilus influenzae Rd KW20

42.376

99.02

0.42
  comM Legionella pneumophila str. Paris

40.358

98.627

0.398
  comM Legionella pneumophila strain ERS1305867

40.358

98.627

0.398