Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4I01_RS06400 Genome accession   NZ_CP032909
Coordinates   1292675..1293133 (+) Length   152 a.a.
NCBI ID   WP_201737881.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-A-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287675..1298133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I01_RS06380 dnaK 1287754..1289616 (+) 1863 WP_139543366.1 molecular chaperone DnaK -
  D4I01_RS06385 - 1289856..1290428 (-) 573 WP_139543367.1 hypothetical protein -
  D4I01_RS06390 - 1290557..1291474 (+) 918 WP_201737880.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4I01_RS06395 - 1291495..1292637 (+) 1143 WP_139543369.1 cystathionine gamma-synthase -
  D4I01_RS06400 luxS 1292675..1293133 (+) 459 WP_201737881.1 S-ribosylhomocysteine lyase Regulator
  D4I01_RS06405 - 1293311..1295020 (+) 1710 WP_339326766.1 5'-nucleotidase C-terminal domain-containing protein -
  D4I01_RS06410 tlpB 1295226..1296923 (+) 1698 Protein_1215 methyl-accepting chemotaxis protein TlpB -
  D4I01_RS06415 - 1296955..1297737 (+) 783 WP_139545865.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17341.76 Da        Isoelectric Point: 6.6039

>NTDB_id=280957 D4I01_RS06400 WP_201737881.1 1292675..1293133(+) (luxS) [Helicobacter pylori strain 21-A-EK1]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=280957 D4I01_RS06400 WP_201737881.1 1292675..1293133(+) (luxS) [Helicobacter pylori strain 21-A-EK1]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGCTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCTA
AGGATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.972

92.763

0.408

Multiple sequence alignment