Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   C7K43_RS09405 Genome accession   NZ_CP027786
Coordinates   1951770..1953044 (+) Length   424 a.a.
NCBI ID   WP_124006603.1    Uniprot ID   -
Organism   Tetragenococcus koreensis strain KCTC 3924     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946770..1958044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7K43_RS09385 (C7K43_09405) - 1947512..1948999 (-) 1488 WP_124006599.1 phytoene desaturase family protein -
  C7K43_RS09390 (C7K43_09410) msrA 1949336..1950169 (-) 834 WP_124006600.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C7K43_RS09395 (C7K43_09415) - 1950365..1950892 (-) 528 WP_124006601.1 adenylyl-sulfate kinase -
  C7K43_RS09400 (C7K43_09420) rlmH 1950948..1951427 (-) 480 WP_124006602.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  C7K43_RS09405 (C7K43_09425) htrA 1951770..1953044 (+) 1275 WP_124006603.1 S1C family serine protease Regulator
  C7K43_RS09410 (C7K43_09430) ytpR 1953089..1953697 (-) 609 WP_124006604.1 YtpR family tRNA-binding protein -
  C7K43_RS09415 (C7K43_09435) - 1953757..1954218 (-) 462 WP_124006605.1 universal stress protein -
  C7K43_RS09420 (C7K43_09440) - 1954240..1954554 (-) 315 WP_124006606.1 thioredoxin family protein -
  C7K43_RS09425 (C7K43_09445) pepA 1954983..1956059 (-) 1077 WP_124007275.1 glutamyl aminopeptidase -
  C7K43_RS09430 (C7K43_09450) - 1956204..1957061 (+) 858 WP_124006607.1 aminoglycoside 6-adenylyltransferase -
  C7K43_RS09435 (C7K43_09455) - 1957183..1957524 (+) 342 WP_124006608.1 hypothetical protein -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 44460.41 Da        Isoelectric Point: 3.8178

>NTDB_id=280649 C7K43_RS09405 WP_124006603.1 1951770..1953044(+) (htrA) [Tetragenococcus koreensis strain KCTC 3924]
MAKKDVTPRPKKSGWVKKFGIGLLGGVIGGLLVIGGFYYLSGGSVNPFQSNEATSTSGVTDDNDNVQVSNVKVDADSDTT
DAVNKVQDAVVSVINLQNASPQGSEGFFDTEQQEDDSEEEPAGEGSGVIYKEDGDNAYIVTNNHVVEGQNGLEVLMSDGT
RETAELVGTDAYTDLAVLQISSDNVDTVATFGDSDELKVGEPAIAIGSPLGSDYANSVTQGIISSLNRLVSSQSESGEDV
NINAIQTDAAINPGNSGGPLINAGGQVVGINSSKIASSGQAGVSVEGMGFSIPSNDVTDIINELEQNGEITRPALGISML
DLNTISTEQREQVLKIPDSVENGVVVQNPGNNSPASDAGLEQYDVITKADDKEITNSTELRAALYKKSVGDNLKLTFYRE
GEEQSVNIKLSEDQSIIEQNNGNQ

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=280649 C7K43_RS09405 WP_124006603.1 1951770..1953044(+) (htrA) [Tetragenococcus koreensis strain KCTC 3924]
ATGGCAAAAAAAGATGTGACTCCCCGTCCTAAAAAGAGTGGGTGGGTTAAAAAATTTGGAATTGGTCTGTTAGGTGGGGT
AATCGGTGGACTACTTGTAATCGGTGGATTTTATTATCTTTCCGGCGGTTCAGTTAACCCCTTCCAATCAAACGAAGCAA
CTTCCACATCCGGTGTAACGGATGATAATGACAATGTACAAGTAAGTAATGTGAAAGTCGACGCGGATAGTGACACAACT
GATGCAGTAAATAAAGTGCAAGATGCGGTTGTTTCCGTTATTAACCTACAAAACGCTTCACCACAAGGAAGTGAGGGCTT
CTTTGATACAGAACAACAAGAAGATGACTCAGAGGAAGAACCTGCAGGTGAAGGTAGTGGTGTGATTTATAAAGAAGATG
GCGATAATGCCTACATCGTAACAAATAACCACGTTGTCGAAGGTCAAAATGGACTAGAAGTTTTGATGTCCGACGGCACA
AGAGAAACTGCAGAATTAGTTGGAACAGACGCATATACCGATTTAGCTGTTTTGCAAATTTCTTCTGATAATGTAGATAC
TGTTGCAACATTTGGAGATTCAGATGAGTTAAAAGTCGGTGAACCTGCTATTGCAATTGGCTCTCCTTTAGGTTCTGACT
ATGCCAATTCTGTAACACAAGGAATCATTTCTTCTTTAAATCGTTTGGTATCAAGTCAAAGTGAATCTGGTGAAGATGTG
AATATCAATGCTATTCAAACCGATGCTGCAATCAACCCTGGTAATTCTGGTGGACCTCTAATCAACGCTGGTGGTCAAGT
AGTTGGTATTAATTCTAGTAAAATTGCTAGTTCCGGCCAAGCAGGTGTAAGTGTTGAAGGCATGGGCTTTTCTATTCCAA
GTAACGATGTGACTGATATTATTAACGAATTAGAACAAAATGGTGAAATTACTCGTCCAGCACTAGGCATTTCCATGCTT
GACTTAAATACTATTTCTACTGAACAAAGGGAACAAGTTTTGAAAATTCCTGATTCTGTAGAAAATGGTGTTGTCGTCCA
AAATCCTGGTAATAACTCTCCAGCAAGTGACGCAGGTTTAGAACAATACGATGTCATTACAAAAGCTGATGATAAAGAAA
TAACAAACTCTACCGAACTTCGAGCTGCCTTGTATAAAAAATCAGTAGGAGATAACTTGAAACTTACTTTTTATCGAGAA
GGTGAGGAGCAGTCAGTAAACATTAAATTGTCAGAAGATCAATCAATCATTGAACAAAATAACGGAAACCAATAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(125-270)

PDZ domain (PDZ_2)

(313-410)

Peptidase family M50 (Peptidase_M50)

(256-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

52.854

95.047

0.502
  htrA Streptococcus mitis NCTC 12261

53.158

89.623

0.476
  htrA Streptococcus pneumoniae Rx1

52.618

90.094

0.474
  htrA Streptococcus pneumoniae TIGR4

52.618

90.094

0.474
  htrA Streptococcus pneumoniae D39

52.618

90.094

0.474
  htrA Streptococcus pneumoniae R6

52.618

90.094

0.474
  htrA Streptococcus gordonii str. Challis substr. CH1

50.508

92.925

0.469

Multiple sequence alignment