Detailed information NTG0028061

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HSM_RS00730
• Genome accession: NC_010519
• Coordinates: 152913..153920 (+)
• Length: 335 a.a.
• NCBI ID: WP_011608424.1
• Uniprot ID: B0UVK4
• Organism: Histophilus somni 2336
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 147913..158920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSM_RS00715 (HSM_0140)	comQ	148405..148722 (+)	318	WP_012340547.1	DUF5374 domain-containing protein	Machinery gene
HSM_RS00720 (HSM_0141)	recC	148775..152209 (+)	3435	WP_012340558.1	exodeoxyribonuclease V subunit gamma	-
HSM_RS00725 (HSM_0142)	ruvA	152288..152902 (+)	615	WP_011608423.1	Holliday junction branch migration protein RuvA	Machinery gene
HSM_RS00730 (HSM_0143)	ruvB	152913..153920 (+)	1008	WP_011608424.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HSM_RS00735 (HSM_0144)	-	154034..155242 (-)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
HSM_RS00740 (HSM_0145)	cmoB	155242..156207 (-)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
HSM_RS00745 (HSM_0146)	putP	156210..157724 (-)	1515	WP_012340603.1	sodium/proline symporter PutP	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37249.83 Da
• Isoelectric Point: 4.7362

>NTDB_id=28061 HSM_RS00730 WP_011608424.1 152913..153920(+) (ruvB) [Histophilus somni 2336]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVEAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=28061 HSM_RS00730 WP_011608424.1 152913..153920(+) (ruvB) [Histophilus somni 2336]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCTGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTGGCGGCAATGCTAACGAATCTTGAGCCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCAGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGAAGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCACAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGTGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACCATTGAAGATGTATTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: B0UVK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae R6	58.133	99.104	0.576
ruvB	Streptococcus pneumoniae D39	58.133	99.104	0.576
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	57.237	90.746	0.519