Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   HSM_RS00715 Genome accession   NC_010519
Coordinates   148405..148722 (+) Length   105 a.a.
NCBI ID   WP_012340547.1    Uniprot ID   A0A9Q6K6P7
Organism   Histophilus somni 2336     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143405..153722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00675 (HSM_0135) tolB 144044..145348 (+) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  HSM_RS00680 (HSM_0136) pal 145358..145813 (+) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  HSM_RS00700 (HSM_0137) comN 146488..147015 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HSM_RS00705 (HSM_0138) comO 147064..147741 (+) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  HSM_RS00710 (HSM_0139) comP 147744..148424 (+) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  HSM_RS00715 (HSM_0140) comQ 148405..148722 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  HSM_RS00720 (HSM_0141) recC 148775..152209 (+) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  HSM_RS00725 (HSM_0142) ruvA 152288..152902 (+) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12552.55 Da        Isoelectric Point: 9.7112

>NTDB_id=28059 HSM_RS00715 WP_012340547.1 148405..148722(+) (comQ) [Histophilus somni 2336]
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=28059 HSM_RS00715 WP_012340547.1 148405..148722(+) (comQ) [Histophilus somni 2336]
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6K6P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

46.667

85.714

0.4