Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   HSM_RS00705 Genome accession   NC_010519
Coordinates   147064..147741 (+) Length   225 a.a.
NCBI ID   WP_080514398.1    Uniprot ID   -
Organism   Histophilus somni 2336     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142064..152741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00665 (HSM_0133) tolR 142520..142942 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  HSM_RS00670 (HSM_0134) tolA 142961..144016 (+) 1056 WP_012340495.1 cell envelope integrity protein TolA -
  HSM_RS00675 (HSM_0135) tolB 144044..145348 (+) 1305 WP_012340504.1 Tol-Pal system beta propeller repeat protein TolB -
  HSM_RS00680 (HSM_0136) pal 145358..145813 (+) 456 WP_012340512.1 peptidoglycan-associated lipoprotein Pal -
  HSM_RS00700 (HSM_0137) comN 146488..147015 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HSM_RS00705 (HSM_0138) comO 147064..147741 (+) 678 WP_080514398.1 type II secretion system protein J Machinery gene
  HSM_RS00710 (HSM_0139) comP 147744..148424 (+) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  HSM_RS00715 (HSM_0140) comQ 148405..148722 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  HSM_RS00720 (HSM_0141) recC 148775..152209 (+) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25781.51 Da        Isoelectric Point: 8.8841

>NTDB_id=28057 HSM_RS00705 WP_080514398.1 147064..147741(+) (comO) [Histophilus somni 2336]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFAQDKSGKSIVV
AQADNEPPNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFNWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=28057 HSM_RS00705 WP_080514398.1 147064..147741(+) (comO) [Histophilus somni 2336]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGCACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCCCCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGATGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TAATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.718

92.889

0.471

Multiple sequence alignment