Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HSM_RS00725 Genome accession   NC_010519
Coordinates   152288..152902 (+) Length   204 a.a.
NCBI ID   WP_011608423.1    Uniprot ID   B0UVK3
Organism   Histophilus somni 2336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147288..157902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSM_RS00710 (HSM_0139) comP 147744..148424 (+) 681 WP_011608420.1 DUF2572 family protein Machinery gene
  HSM_RS00715 (HSM_0140) comQ 148405..148722 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  HSM_RS00720 (HSM_0141) recC 148775..152209 (+) 3435 WP_012340558.1 exodeoxyribonuclease V subunit gamma -
  HSM_RS00725 (HSM_0142) ruvA 152288..152902 (+) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  HSM_RS00730 (HSM_0143) ruvB 152913..153920 (+) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HSM_RS00735 (HSM_0144) - 154034..155242 (-) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  HSM_RS00740 (HSM_0145) cmoB 155242..156207 (-) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  HSM_RS00745 (HSM_0146) putP 156210..157724 (-) 1515 WP_012340603.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22637.63 Da        Isoelectric Point: 8.0493

>NTDB_id=28060 HSM_RS00725 WP_011608423.1 152288..152902(+) (ruvA) [Histophilus somni 2336]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=28060 HSM_RS00725 WP_011608423.1 152288..152902(+) (ruvA) [Histophilus somni 2336]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTGGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACTGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368