Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   C7H83_RS02905 Genome accession   NZ_CP027768
Coordinates   570716..571984 (-) Length   422 a.a.
NCBI ID   WP_103892044.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 565716..576984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS02870 (C7H83_02865) pepV 565796..567208 (+) 1413 WP_069028567.1 dipeptidase PepV -
  C7H83_RS02875 (C7H83_02870) - 567320..567661 (-) 342 WP_061840694.1 hypothetical protein -
  C7H83_RS02880 (C7H83_02875) - 567753..567905 (-) 153 Protein_529 aminoglycoside 6-adenylyltransferase -
  C7H83_RS02885 (C7H83_02880) pepA 568049..569125 (+) 1077 WP_061840693.1 glutamyl aminopeptidase -
  C7H83_RS02890 (C7H83_02885) - 569213..569527 (+) 315 WP_061840692.1 thioredoxin family protein -
  C7H83_RS02895 (C7H83_02890) - 569550..570008 (+) 459 WP_103892045.1 universal stress protein -
  C7H83_RS02900 (C7H83_02895) ytpR 570061..570672 (+) 612 WP_014123649.1 YtpR family tRNA-binding protein -
  C7H83_RS02905 (C7H83_02900) htrA 570716..571984 (-) 1269 WP_103892044.1 S1C family serine protease Regulator
  C7H83_RS02910 (C7H83_02905) rlmH 572326..572805 (+) 480 WP_069028570.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  C7H83_RS02915 (C7H83_02910) msrA 572960..573784 (+) 825 WP_103892043.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C7H83_RS02920 (C7H83_02915) - 573951..576077 (+) 2127 WP_094244013.1 transcription antiterminator -
  C7H83_RS02925 (C7H83_02920) - 576077..576370 (+) 294 WP_061840685.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 43972.76 Da        Isoelectric Point: 3.7309

>NTDB_id=280368 C7H83_RS02905 WP_103892044.1 570716..571984(-) (htrA) [Tetragenococcus halophilus strain LMG 26042]
MAKKNVTPDSKKGGWIKKFGIGLLGGLIGGLLVIGGFYYFSNGNPFQTNEATSSSGVTDNNDDVQVSDVKVDADSDTTDA
VENVQNAVVSVINLQNSSPQESGGIFGTEQPEGNSEDDEEPAGEGSGVIYKEDGGDAYIVTNNHVVAGQSGLEVVMADGS
REQAELVGTDAYTDLAVLKISSDNVDTVATFGDSDELQVGEPAIAIGSPLGSDYANSVTQGIISSVNRLVSSQNESGEDV
STNAIQTDAAINPGNSGGPLVNAGGQVVGINSSKIASSGQAGVSVEGMGFAIPSNDVTDIINELEENGEIARPALGISML
DLNTIPTEQRQRVLQIPEDVENGVVVENPGNGTPASDAGLEQYDVITKVDDKEIKDSTELRAALYEKSVGDTLKLTFYRQ
DDAQSVNVKLSEDQSIIESNNE

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=280368 C7H83_RS02905 WP_103892044.1 570716..571984(-) (htrA) [Tetragenococcus halophilus strain LMG 26042]
ATGGCAAAAAAGAATGTAACACCTGATTCTAAAAAAGGCGGGTGGATTAAAAAATTCGGAATTGGCCTATTAGGTGGATT
AATAGGCGGGTTACTTGTCATTGGCGGCTTTTATTATTTTTCTAATGGTAACCCATTTCAAACAAATGAAGCAACTTCTT
CATCTGGCGTAACAGATAATAACGACGACGTACAGGTCAGTGATGTTAAAGTTGATGCCGATAGTGATACCACAGACGCT
GTAGAAAATGTACAAAATGCTGTCGTTTCAGTGATCAATTTACAAAACTCTTCTCCTCAAGAAAGCGGAGGTATTTTTGG
CACCGAGCAACCAGAAGGCAACTCTGAAGACGACGAGGAGCCAGCTGGTGAAGGTAGTGGTGTGATTTACAAAGAAGATG
GCGGCGATGCCTACATTGTAACAAATAATCACGTAGTTGCCGGACAAAGTGGCTTAGAAGTAGTTATGGCAGACGGTAGT
AGAGAACAAGCAGAATTAGTAGGTACTGATGCTTATACTGACTTAGCCGTATTAAAAATTTCTTCTGATAATGTAGACAC
AGTAGCTACATTCGGTGATTCTGATGAATTACAAGTAGGTGAACCAGCGATCGCTATTGGTTCTCCTCTAGGTTCTGATT
ATGCTAATTCAGTAACCCAAGGAATTATTTCTTCAGTCAATCGTTTAGTATCCAGCCAAAATGAATCTGGCGAAGATGTG
AGCACAAATGCTATTCAAACGGACGCTGCAATCAACCCAGGAAATTCTGGCGGGCCATTGGTCAATGCTGGTGGACAAGT
TGTTGGAATTAACTCCAGTAAAATTGCTAGTTCCGGACAAGCTGGCGTAAGTGTTGAAGGCATGGGCTTTGCTATTCCAA
GTAATGATGTAACAGATATTATTAATGAATTGGAAGAAAATGGTGAAATTGCTCGTCCAGCGTTAGGCATCTCCATGCTT
GATTTAAATACCATTCCTACAGAACAAAGACAACGTGTTTTACAAATCCCTGAGGATGTAGAAAACGGTGTTGTTGTAGA
AAATCCTGGCAATGGTACACCAGCAAGTGATGCAGGATTAGAACAATACGATGTTATTACAAAAGTTGATGATAAAGAAA
TAAAAGATTCTACTGAGCTACGTGCCGCTTTATATGAAAAATCAGTAGGAGATACTTTGAAATTGACTTTTTATCGACAA
GATGACGCACAATCTGTAAATGTTAAACTATCAGAAGATCAATCAATCATTGAAAGCAACAACGAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(313-410)

Trypsin-like peptidase domain (Trypsin_2)

(125-270)

Peptidase family M50 (Peptidase_M50)

(317-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

58.38

84.834

0.495
  htrA Streptococcus mitis NCTC 12261

50.256

92.417

0.464
  htrA Streptococcus gordonii str. Challis substr. CH1

49.745

92.891

0.462
  htrA Streptococcus pneumoniae TIGR4

49.744

92.417

0.46
  htrA Streptococcus pneumoniae D39

49.744

92.417

0.46
  htrA Streptococcus pneumoniae Rx1

49.744

92.417

0.46
  htrA Streptococcus pneumoniae R6

49.744

92.417

0.46

Multiple sequence alignment