Detailed information NTG0027974

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PST_RS13235
• Genome accession: NC_009434
• Coordinates: 2856687..2858912 (-)
• Length: 741 a.a.
• NCBI ID: WP_011913747.1
• Uniprot ID: A4VMT8
• Organism: Stutzerimonas stutzeri A1501
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2851687..2863912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PST_RS13200 (PST_2632)	murB	2852077..2853096 (-)	1020	WP_011913740.1	UDP-N-acetylmuramate dehydrogenase	-
PST_RS13205 (PST_2633)	-	2853093..2853560 (-)	468	WP_011913741.1	low molecular weight protein-tyrosine-phosphatase	-
PST_RS13210 (PST_2634)	kdsB	2853562..2854326 (-)	765	WP_017243958.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PST_RS13215 (PST_2635)	-	2854323..2854508 (-)	186	WP_011913743.1	Trm112 family protein	-
PST_RS13220 (PST_2636)	lpxK	2854554..2855558 (-)	1005	WP_011913744.1	tetraacyldisaccharide 4'-kinase	-
PST_RS13225 (PST_2637)	-	2855558..2855986 (-)	429	WP_011913745.1	ExbD/TolR family protein	-
PST_RS13230 (PST_2638)	-	2855983..2856615 (-)	633	WP_013983260.1	MotA/TolQ/ExbB proton channel family protein	-
PST_RS13235 (PST_2639)	comA	2856687..2858912 (-)	2226	WP_011913747.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PST_RS13240 (PST_2640)	-	2859057..2859572 (+)	516	WP_011913748.1	DUF2062 domain-containing protein	-
PST_RS13245 (PST_2641)	-	2859585..2860829 (-)	1245	WP_041755914.1	lipoprotein-releasing ABC transporter permease subunit	-
PST_RS13250 (PST_2642)	lolD	2860829..2861527 (-)	699	WP_041755577.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PST_RS13255 (PST_2644)	-	2861535..2862782 (-)	1248	WP_020307157.1	lipoprotein-releasing ABC transporter permease subunit	-
PST_RS13260 (PST_2643)	-	2862815..2863450 (+)	636	WP_011913752.1	PilZ domain-containing protein	-
PST_RS13265 (PST_2645)	-	2863454..2863762 (+)	309	WP_011913753.1	hypothetical protein	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80992.59 Da
• Isoelectric Point: 9.4516

>NTDB_id=27974 PST_RS13235 WP_011913747.1 2856687..2858912(-) (comA) [Stutzerimonas stutzeri A1501]
MRTWMLALAAGLVLPRFLPALPAQWFCAALVAVGLLLLLRHRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIQSRHAGLPSKVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHAFDYEAWLLARRIGAT
GTIKAGERLTASTASDGWRDQLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLVRLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWCWWMALTRAQWAATLGLLPLLLALGLPVSASGPLANLLAVPWVSLTVPF
ALLGTLLLPVAGVGEALLSVVGYSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGLLLLLP
LAFPPRVEVPDGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGDFDTGERVVVPSLRTLGVTRLDLLLLSHADNDHSG
GADAVQRLLRVDRVVSGEPSRLAPDLGAEHCESGSSWQWNDVRFSLWQWQMARDSNQQSCMLQIEANGERILLTGDIDQA
AEQAWLASEQRTPSHWLLLPHHGSRSSSSEPFLRGVASHAALISRSLHNAFGHPHPSVVERLETLDIRAYDTALHGAIRI
ELGSFSPPRLQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=27974 PST_RS13235 WP_011913747.1 2856687..2858912(-) (comA) [Stutzerimonas stutzeri A1501]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGTCTGGTCCTGCCACGCTTCCTTCCTGCCTTGCCCGCGCAGTGGTTCTG
TGCGGCGCTGGTGGCTGTCGGACTGCTGCTCCTGCTGCGTCACCGCTGGGTGGCGCCGGGCTTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTACCGGCGTCCATGGACGGTCGCACCTTTTGGATCGAG
GGGCGGGTAGTGGGGTTGCCCAGTCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCCAATCGCGGCATGCCGG
GTTGCCATCGAAGGTGCGGCTGTCGTGGTATGACGGTCCGCTGCTGCAAGCCGGCGAGCGCTGGCGCCTGGCGGCGCGAC
TGAAGCGACCCCATGGCATGGTCAATCCCCACGCCTTCGATTACGAAGCCTGGTTGCTGGCGAGACGCATCGGCGCCACG
GGCACGATAAAGGCAGGCGAGCGCCTGACGGCGTCGACGGCAAGCGACGGATGGCGCGATCAGCTTCGGGCGCGGCTCAT
GGCCGTGCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGTTGCAGGACACCGGCACCGTCCACCTGATGGTCATCTCAGGACAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGTTCGTCTGGGTGCGTGGCCGCGGCGGTTGCCCTGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGTGCGCTGGCCTATGGCTGGCTGGCCGGCTTCGAGGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCACCTGGGTGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTCACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGCTCATGGTGCTGGTGGATGGCGCTGACCCGGGCGCAGTGGGCGGCCACCCTTGGTCTGCTTCCGCTGTTGCTGG
CCCTCGGACTGCCGGTAAGTGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTACCCTGGGTGAGTCTGACCGTGCCCTTT
GCGTTGCTCGGTACGCTCCTGCTGCCCGTGGCCGGGGTTGGCGAAGCGCTGCTGTCGGTGGTGGGCTATTCGCTGGCATT
GCTGTTCGACGTCCTGGCGGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCGCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCCGCGGGTATTCCGCTGCGTTCGCTGGGTTTGCTGCTGCTGTTGCCG
CTGGCGTTCCCGCCTCGTGTCGAGGTGCCAGACGGCCGGGCGCAGGTCTGGGTATTGGATGTGGGGCAGGGCCTGGCGGT
GCTTGTACGCACCCGCGAGCATGCACTGCTCTACGATGCCGGGCCGAAGCAGGGCGACTTCGATACGGGCGAGCGGGTGG
TCGTCCCTTCGCTCCGGACCCTTGGCGTGACTCGGTTGGACCTGCTGTTGCTGAGTCATGCCGATAATGATCATTCGGGC
GGTGCGGACGCGGTTCAGCGGTTGCTGAGGGTTGATCGGGTGGTCAGTGGCGAGCCGTCGCGCCTTGCGCCTGATCTGGG
CGCCGAACATTGCGAAAGCGGTAGCAGCTGGCAGTGGAACGACGTGCGCTTCAGTCTGTGGCAATGGCAGATGGCACGCG
ACAGCAATCAGCAGTCCTGCATGCTGCAAATCGAGGCCAATGGTGAGCGGATCCTGCTCACCGGCGACATCGACCAGGCC
GCGGAGCAGGCATGGCTGGCAAGCGAACAGCGCACCCCATCGCACTGGCTGTTACTGCCCCACCATGGCAGCCGCAGCTC
GTCGTCAGAACCGTTTCTGCGCGGCGTCGCCTCCCATGCCGCGCTGATCTCGCGCAGCCTGCACAATGCCTTTGGCCACC
CACACCCAAGCGTGGTCGAGCGGCTCGAGACCCTTGATATCCGGGCCTACGACACCGCCTTGCATGGCGCAATCCGCATA
GAGCTGGGAAGCTTTTCGCCTCCTCGGCTACAACGTTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-674)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Competence protein (Competence) (201-464)

3D structure

• AlphaFold DB: A4VMT8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.807	96.356	0.644
comA	Ralstonia pseudosolanacearum GMI1000	36.903	100	0.386