Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHEW_RS01465 Genome accession   NC_009092
Coordinates   300316..301836 (-) Length   506 a.a.
NCBI ID   WP_011864089.1    Uniprot ID   -
Organism   Shewanella loihica PV-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295316..306836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEW_RS01440 (Shew_0278) - 295678..296769 (+) 1092 WP_011864084.1 branched-chain amino acid aminotransferase -
  SHEW_RS01445 (Shew_0279) - 296813..297217 (-) 405 WP_150099931.1 hypothetical protein -
  SHEW_RS01450 (Shew_0280) - 297449..298138 (-) 690 WP_041406280.1 GntR family transcriptional regulator -
  SHEW_RS01455 (Shew_0281) - 298344..299291 (-) 948 WP_011864087.1 acyltransferase -
  SHEW_RS01460 (Shew_0282) - 299316..300200 (-) 885 WP_011864088.1 acyltransferase -
  SHEW_RS01465 (Shew_0283) comM 300316..301836 (-) 1521 WP_011864089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHEW_RS01470 (Shew_0284) - 302166..303491 (+) 1326 WP_011864090.1 hemolysin family protein -
  SHEW_RS01475 (Shew_0285) - 303520..304401 (-) 882 WP_011864091.1 diguanylate cyclase domain-containing protein -
  SHEW_RS01480 (Shew_0286) - 304599..305408 (-) 810 WP_011864092.1 ABC transporter substrate-binding protein -
  SHEW_RS01485 (Shew_0287) ilvY 305476..306360 (-) 885 WP_011864093.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55160.25 Da        Isoelectric Point: 8.3901

>NTDB_id=27705 SHEW_RS01465 WP_011864089.1 300316..301836(-) (comM) [Shewanella loihica PV-4]
MAIACVTTRASLGVAAPEVTVEVHLSNGLPAFSLVGLPETSVKEAKERVRSALINAGFEFPQRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPDTHLADHEFIGELALSGQIRPCSGILPVIIDARKQDKTLVLPLENRGDAELVGYRKCFFAAHL
QGLAQYLHGQASLPGLTQDLQWLDTQADTDHKCLSDVIGQYQAKRALEIAAAGNHNLLFLGPPGTGKTMLASRMMQLLPP
LDYDEALEVAAIHSVAGLSIPMQAFYRRPFRCPHHTSSAISLVGGGSHPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGDSANARATPDQIQRYLARLSGPFIDRFDLTIEVPRLPQGTLTSSQR
GETSRDVAQRVHQARERQLSRAGVLNAELSGKLLTQTAGFSQKDLEFLEQSVNQLGLSVRSYHRLQRVARTIADLEQSKD
VARHHIAQALGYRAMDRLLNSLKTPY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=27705 SHEW_RS01465 WP_011864089.1 300316..301836(-) (comM) [Shewanella loihica PV-4]
ATGGCCATCGCCTGCGTCACCACGCGCGCCAGCCTAGGCGTGGCAGCTCCCGAAGTCACGGTCGAAGTGCATCTCAGCAA
TGGCCTGCCCGCCTTCAGCCTGGTGGGACTCCCTGAAACCTCAGTCAAAGAAGCCAAGGAGCGGGTGCGCAGCGCCCTGA
TCAATGCCGGGTTTGAATTTCCTCAACGCAGAATAACCGTCAATCTGGCTCCTGCGGATCTGCCCAAACAGGGGGGCCGC
TACGATCTCCCCATCGCCATCGGTATACTGGCCGCCTCCAAGCAGGTGCCCGATACCCATTTGGCGGATCATGAGTTCAT
CGGCGAGTTGGCCCTCTCCGGGCAGATAAGACCCTGCAGCGGCATCTTGCCGGTGATCATAGATGCCCGTAAACAGGACA
AGACCTTAGTCCTCCCCTTGGAGAATCGAGGCGACGCCGAGCTAGTCGGTTATCGAAAGTGCTTCTTCGCCGCCCACCTG
CAAGGCTTAGCCCAGTACCTGCACGGTCAGGCTTCGCTGCCCGGCCTGACCCAAGATCTGCAATGGCTGGATACTCAGGC
TGACACCGACCACAAGTGCCTCAGCGATGTGATAGGCCAATATCAGGCCAAGCGCGCCCTGGAGATAGCCGCCGCCGGCA
ATCATAACCTGTTGTTTCTCGGCCCTCCTGGGACGGGCAAGACGATGCTGGCCAGCCGCATGATGCAGCTGCTGCCGCCA
CTGGACTATGACGAGGCGTTGGAGGTCGCCGCCATTCACTCGGTGGCGGGGCTCAGCATTCCCATGCAGGCCTTTTATCG
GCGCCCCTTTCGCTGCCCTCACCACACCAGCTCGGCCATCTCACTTGTGGGCGGTGGCAGCCATCCCAAGCCGGGCGAGA
TCTCCCTTGCCCATCGCGGCGTGCTCTTCCTCGACGAGGTGGCCGAGTTTCCCCGCAAGGTGCTCGATTGCCTGCGAGAG
CCGATGGAGACAGGCGAGGTGGTGATCTCCCGTGCCGCCGCCAAGCTCACTTTTGCCAGCCGCTTTCAGTTGATCGCCGC
CATGAACCCCAGCCCCTGCGGCGACAGTGCCAACGCCAGGGCCACCCCAGATCAGATCCAGCGCTATCTCGCCAGACTCT
CGGGGCCCTTCATCGATCGCTTCGATCTCACCATAGAGGTGCCCCGGCTGCCCCAAGGCACACTCACCAGCAGTCAGCGT
GGTGAAACCAGCCGAGATGTTGCTCAGCGAGTGCATCAGGCCAGAGAGCGCCAGCTGAGCCGCGCCGGAGTGCTGAACGC
TGAGCTGAGCGGTAAACTGCTCACGCAAACCGCAGGCTTCAGCCAGAAGGATCTCGAGTTTCTCGAGCAGAGTGTCAACC
AGCTCGGGCTCTCGGTGCGCAGCTATCACAGGCTGCAGAGGGTTGCCCGCACCATAGCCGATCTTGAGCAGAGCAAAGAT
GTCGCCCGCCACCACATCGCCCAAGCACTTGGCTATCGTGCCATGGATCGTCTGCTCAATAGCCTGAAAACGCCTTACTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.751

100

0.573
  comM Haemophilus influenzae Rd KW20

55.929

100

0.559
  comM Vibrio campbellii strain DS40M4

55.446

99.802

0.553
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

49.299

98.617

0.486
  comM Legionella pneumophila strain ERS1305867

49.299

98.617

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.828

97.826

0.419

Multiple sequence alignment