Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   SPH_RS13275 Genome accession   NC_010380
Coordinates   1338258..1338605 (-) Length   115 a.a.
NCBI ID   WP_078133805.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333258..1343605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS06965 (SPH_1441) - 1333613..1333855 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  SPH_RS06970 (SPH_1442) - 1333912..1334400 (-) 489 WP_001835775.1 hypothetical protein -
  SPH_RS06975 - 1334479..1335150 (-) 672 Protein_1350 Dyp-type peroxidase domain-containing protein -
  SPH_RS13265 - 1335153..1335564 (-) 412 Protein_1351 winged helix-turn-helix domain-containing protein -
  SPH_RS13735 - 1335667..1335891 (-) 225 Protein_1352 hypothetical protein -
  SPH_RS06985 (SPH_1446) gdhA 1336233..1337579 (+) 1347 WP_000199549.1 NADP-specific glutamate dehydrogenase -
  SPH_RS06990 (SPH_1447) - 1338075..1338245 (-) 171 WP_000711942.1 hypothetical protein -
  SPH_RS13275 comA/nlmT 1338258..1338605 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  SPH_RS14335 comA 1338662..1338826 (-) 165 WP_109701449.1 hypothetical protein Regulator
  SPH_RS07000 - 1338852..1339351 (-) 500 Protein_1357 transposase -
  SPH_RS12670 (SPH_1450) - 1339360..1340074 (+) 715 Protein_1358 IS630 family transposase -
  SPH_RS07015 (SPH_1451) - 1340308..1340760 (-) 453 Protein_1359 hypothetical protein -
  SPH_RS07020 (SPH_1453) - 1340762..1341049 (-) 288 WP_000869754.1 hypothetical protein -
  SPH_RS07030 (SPH_1455) - 1341634..1342985 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  SPH_RS14340 - 1343085..1343483 (-) 399 Protein_1362 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12762.88 Da        Isoelectric Point: 9.7118

>NTDB_id=27660 SPH_RS13275 WP_078133805.1 1338258..1338605(-) (comA/nlmT) [Streptococcus pneumoniae Hungary19A-6]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDA
DIIVVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=27660 SPH_RS13275 WP_078133805.1 1338258..1338605(-) (comA/nlmT) [Streptococcus pneumoniae Hungary19A-6]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

49.074

93.913

0.461
  comA Streptococcus mitis NCTC 12261

49.074

93.913

0.461
  comA Streptococcus mitis SK321

49.074

93.913

0.461
  comA Streptococcus pneumoniae R6

48.148

93.913

0.452
  comA Streptococcus pneumoniae Rx1

48.148

93.913

0.452
  comA Streptococcus pneumoniae D39

48.148

93.913

0.452
  comA Streptococcus pneumoniae TIGR4

48.148

93.913

0.452
  rcrQ Streptococcus mutans UA159

42.105

99.13

0.417
  rcrP Streptococcus mutans UA159

44.33

84.348

0.374