Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SPH_RS14335 Genome accession   NC_010380
Coordinates   1338662..1338826 (-) Length   54 a.a.
NCBI ID   WP_109701449.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333662..1343826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS06970 (SPH_1442) - 1333912..1334400 (-) 489 WP_001835775.1 hypothetical protein -
  SPH_RS06975 - 1334479..1335150 (-) 672 Protein_1350 Dyp-type peroxidase domain-containing protein -
  SPH_RS13265 - 1335153..1335564 (-) 412 Protein_1351 winged helix-turn-helix domain-containing protein -
  SPH_RS13735 - 1335667..1335891 (-) 225 Protein_1352 hypothetical protein -
  SPH_RS06985 (SPH_1446) gdhA 1336233..1337579 (+) 1347 WP_000199549.1 NADP-specific glutamate dehydrogenase -
  SPH_RS06990 (SPH_1447) - 1338075..1338245 (-) 171 WP_000711942.1 hypothetical protein -
  SPH_RS13275 comA/nlmT 1338258..1338605 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  SPH_RS14335 comA 1338662..1338826 (-) 165 WP_109701449.1 hypothetical protein Regulator
  SPH_RS07000 - 1338852..1339351 (-) 500 Protein_1357 transposase -
  SPH_RS12670 (SPH_1450) - 1339360..1340074 (+) 715 Protein_1358 IS630 family transposase -
  SPH_RS07015 (SPH_1451) - 1340308..1340760 (-) 453 Protein_1359 hypothetical protein -
  SPH_RS07020 (SPH_1453) - 1340762..1341049 (-) 288 WP_000869754.1 hypothetical protein -
  SPH_RS07030 (SPH_1455) - 1341634..1342985 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  SPH_RS14340 - 1343085..1343483 (-) 399 Protein_1362 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6025.02 Da        Isoelectric Point: 8.6616

>NTDB_id=27663 SPH_RS14335 WP_109701449.1 1338662..1338826(-) (comA) [Streptococcus pneumoniae Hungary19A-6]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKH

Nucleotide


Download         Length: 165 bp        

>NTDB_id=27663 SPH_RS14335 WP_109701449.1 1338662..1338826(-) (comA) [Streptococcus pneumoniae Hungary19A-6]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAACATAACTTTAAAGC
ACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.308

96.296

0.407
  comA Streptococcus pneumoniae Rx1

40.385

96.296

0.389
  comA Streptococcus pneumoniae D39

40.385

96.296

0.389
  comA Streptococcus pneumoniae R6

40.385

96.296

0.389
  comA Streptococcus mitis SK321

40.385

96.296

0.389

Multiple sequence alignment