Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   D6022_RS03230 Genome accession   NZ_CP032538
Coordinates   645811..647022 (-) Length   403 a.a.
NCBI ID   WP_017475028.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MT-B06     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 640811..652022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS03200 rlmH 641563..642042 (-) 480 WP_003177946.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  D6022_RS03205 - 642123..642281 (-) 159 WP_003177948.1 CxxH/CxxC protein -
  D6022_RS03210 - 642480..642962 (-) 483 WP_009330015.1 DUF4234 domain-containing protein -
  D6022_RS03215 - 643393..643911 (-) 519 WP_011201784.1 N-acetyltransferase -
  D6022_RS03220 - 643942..644412 (-) 471 WP_009330017.1 membrane protein -
  D6022_RS03225 - 644669..645514 (-) 846 WP_011198491.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  D6022_RS03230 htrA 645811..647022 (-) 1212 WP_017475028.1 S1C family serine protease Regulator
  D6022_RS03235 vicX 647105..647899 (-) 795 WP_003177960.1 MBL fold metallo-hydrolase Regulator
  D6022_RS03240 - 647914..648762 (-) 849 WP_003177962.1 two-component system regulatory protein YycI -
  D6022_RS03245 - 648749..650113 (-) 1365 WP_003177963.1 YycH family regulatory protein -
  D6022_RS03250 walK 650103..651947 (-) 1845 WP_003177965.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43105.93 Da        Isoelectric Point: 5.7694

>NTDB_id=276572 D6022_RS03230 WP_017475028.1 645811..647022(-) (htrA) [Bacillus licheniformis strain MT-B06]
MEFNHDEEKFVREKPVRSWRSFLFSSLVGAVIGALLTLFALPYLSQQGWLPYNLQVIEARGGQGAQQGGTVRNVSVNVNN
EVTQVVSKVSDSVVGVINIQKTGVWDGDSEAGTGSGVIYKKDGNTSHIVTNHHVIEGASQIEISLNDGTRIPAKLIGSDK
LMDLAVLQVNSNKIKAAAEFGDSDKVKTGEPVIAIGNPLGLQFSGSVTQGIISGTERAVPVDSNGDGQPDWNAEVLQTDA
AINPGNSGGGLFNIDGKVIGINSMKIAESAVEGIGLSIPANLAIPVIEDLETYGEVRRPYLGIEMKSLGDIASYHWQETL
KLPKNVTSGVVVMGVQPVSPAGRAGLKELDVIVEFNGDRVYDIVDLRKKLYTKNVGDKVKIKYLRGGKEKTTEVKLTRSQ
LGS

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=276572 D6022_RS03230 WP_017475028.1 645811..647022(-) (htrA) [Bacillus licheniformis strain MT-B06]
GTGGAGTTTAATCATGATGAGGAAAAATTCGTTCGGGAAAAGCCGGTGAGAAGTTGGAGAAGCTTTTTGTTTTCAAGCCT
GGTCGGCGCCGTCATCGGCGCTCTTTTAACATTGTTTGCCTTGCCGTATCTCTCGCAGCAGGGATGGCTGCCGTATAATC
TGCAAGTCATCGAAGCGCGCGGCGGCCAAGGAGCACAGCAGGGCGGGACGGTCCGCAATGTATCCGTCAACGTGAATAAT
GAAGTCACGCAAGTGGTCTCTAAGGTTTCTGATTCTGTTGTCGGCGTTATCAACATCCAAAAGACAGGTGTATGGGATGG
TGACAGCGAAGCGGGAACAGGCTCGGGCGTTATTTATAAAAAGGACGGCAACACATCCCACATTGTGACAAACCACCATG
TCATTGAAGGGGCGTCCCAAATAGAAATCAGCCTGAATGACGGAACACGGATTCCGGCAAAACTGATCGGCAGCGATAAG
CTGATGGATCTGGCCGTCCTGCAAGTCAACAGCAACAAAATAAAAGCAGCTGCCGAATTTGGAGATTCTGATAAAGTGAA
GACAGGCGAGCCTGTCATCGCGATTGGAAACCCGCTCGGCCTGCAGTTTTCAGGCTCTGTTACACAAGGAATCATCTCAG
GAACCGAACGCGCTGTGCCGGTCGATTCCAACGGAGACGGACAGCCGGACTGGAACGCCGAAGTACTGCAGACGGATGCT
GCCATTAACCCGGGTAACAGCGGAGGCGGGCTGTTTAATATTGATGGAAAAGTCATCGGCATTAATTCGATGAAAATCGC
TGAATCAGCCGTCGAAGGCATCGGTCTGAGCATTCCGGCCAACCTTGCCATTCCGGTTATCGAAGATTTGGAAACGTACG
GTGAAGTGAGACGGCCGTATCTCGGAATTGAGATGAAATCACTTGGCGATATCGCAAGCTACCACTGGCAGGAAACGCTT
AAACTGCCGAAAAACGTAACATCAGGCGTAGTTGTGATGGGTGTTCAGCCGGTATCTCCTGCAGGCAGAGCCGGTCTGAA
AGAGCTCGATGTCATCGTCGAATTTAACGGTGACCGTGTTTACGATATCGTTGATCTGCGTAAAAAGCTTTACACCAAAA
ACGTCGGCGACAAGGTAAAAATCAAATACCTGCGGGGCGGAAAAGAAAAGACAACAGAAGTAAAGCTGACCCGATCCCAA
TTAGGAAGCTGA

Domains

Predicted by InterProScan.

PDZ domain (PDZ_2)

(299-396)

Peptidase family M50 (Peptidase_M50)

(261-398)

Trypsin-like peptidase domain (Trypsin_2)

(114-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

43.536

94.045

0.409
  htrA Streptococcus mutans UA159

45.17

87.345

0.395
  htrA Streptococcus pneumoniae D39

46.847

82.63

0.387
  htrA Streptococcus pneumoniae TIGR4

46.847

82.63

0.387
  htrA Streptococcus pneumoniae R6

46.847

82.63

0.387
  htrA Streptococcus pneumoniae Rx1

46.847

82.63

0.387
  htrA Streptococcus gordonii str. Challis substr. CH1

42.693

86.6

0.37

Multiple sequence alignment