Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | C3V42_RS05960 | Genome accession | NZ_CP027235 |
| Coordinates | 1231526..1232743 (+) | Length | 405 a.a. |
| NCBI ID | WP_106013963.1 | Uniprot ID | - |
| Organism | Haemophilus sp. oral taxon 036 strain F0629 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1226526..1237743
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3V42_RS05935 (C3V42_05940) | - | 1227116..1227913 (-) | 798 | WP_106013959.1 | sulfite exporter TauE/SafE family protein | - |
| C3V42_RS05940 (C3V42_05945) | rppH | 1227913..1228503 (-) | 591 | WP_005631202.1 | RNA pyrophosphohydrolase | - |
| C3V42_RS05945 (C3V42_05950) | ampD | 1229029..1229583 (-) | 555 | WP_106013960.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| C3V42_RS05950 (C3V42_05955) | pilA | 1229698..1230138 (+) | 441 | WP_106013961.1 | prepilin peptidase-dependent pilin | Machinery gene |
| C3V42_RS05955 (C3V42_05960) | pilB | 1230135..1231529 (+) | 1395 | WP_106013962.1 | GspE/PulE family protein | Machinery gene |
| C3V42_RS05960 (C3V42_05965) | pilC | 1231526..1232743 (+) | 1218 | WP_106013963.1 | type II secretion system F family protein | Machinery gene |
| C3V42_RS05965 (C3V42_05970) | pilD | 1232743..1233432 (+) | 690 | WP_048952810.1 | A24 family peptidase | Machinery gene |
| C3V42_RS05970 (C3V42_05975) | era | 1233667..1234575 (-) | 909 | WP_009766812.1 | GTPase Era | - |
| C3V42_RS05975 (C3V42_05980) | rnc | 1234572..1235255 (-) | 684 | WP_106013964.1 | ribonuclease III | - |
| C3V42_RS05980 (C3V42_05985) | lepB | 1235257..1236306 (-) | 1050 | WP_106013965.1 | signal peptidase I | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 46090.21 Da Isoelectric Point: 9.6652
>NTDB_id=275950 C3V42_RS05960 WP_106013963.1 1231526..1232743(+) (pilC) [Haemophilus sp. oral taxon 036 strain F0629]
MTKKLFYYQGSNALNQKQKGSIIADTKQQAHFQLISRGLTHIRLQQNWQFGAKPKNSEISELLNQLATLLQSAIPLKNSL
QILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQQGKYLTQQEIQLIQVGEMTGKLSVVCKKIATHRSQSLALQRKLQK
IMLYPSMVLGISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAFSCFLFYNFYLKRQTWF
HQQKNQLISITPIFGTIQNLSRLVNFSQSLQIMLQAGVPLNQALESFLPRIQTWQTKKTLVNDIVLDKEVRSILQWVSQG
YAFSHSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVIIGSLIGIIMMGMYLPIFN
MGAVI
MTKKLFYYQGSNALNQKQKGSIIADTKQQAHFQLISRGLTHIRLQQNWQFGAKPKNSEISELLNQLATLLQSAIPLKNSL
QILQQNCTQIMLNEWLERLLQSIESGLAFSQAIEQQGKYLTQQEIQLIQVGEMTGKLSVVCKKIATHRSQSLALQRKLQK
IMLYPSMVLGISLLLTLALLLFIVPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFAFSCFLFYNFYLKRQTWF
HQQKNQLISITPIFGTIQNLSRLVNFSQSLQIMLQAGVPLNQALESFLPRIQTWQTKKTLVNDIVLDKEVRSILQWVSQG
YAFSHSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVIIGSLIGIIMMGMYLPIFN
MGAVI
Nucleotide
Download Length: 1218 bp
>NTDB_id=275950 C3V42_RS05960 WP_106013963.1 1231526..1232743(+) (pilC) [Haemophilus sp. oral taxon 036 strain F0629]
ATGACTAAAAAACTTTTTTATTATCAAGGTAGTAACGCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACGAA
ACAACAAGCACACTTTCAATTAATAAGCCGCGGCCTTACTCACATCAGATTACAACAAAACTGGCAATTTGGGGCAAAGC
CCAAAAATTCAGAAATCAGTGAATTACTCAATCAATTAGCGACATTGCTACAGTCCGCAATTCCGTTAAAAAACAGTCTG
CAAATTTTGCAACAAAATTGTACTCAAATTATGCTCAATGAATGGCTTGAACGACTACTGCAATCCATTGAATCTGGTTT
AGCATTCTCACAGGCGATTGAACAACAAGGGAAATATCTCACACAACAAGAAATTCAACTGATTCAAGTGGGAGAAATGA
CGGGCAAACTTTCCGTTGTTTGTAAAAAAATAGCCACGCATCGTAGCCAATCTTTAGCATTACAACGCAAATTACAGAAA
ATTATGTTATACCCATCAATGGTGTTGGGAATTTCTCTATTATTGACACTCGCATTACTACTTTTTATCGTGCCTCAATT
TGCTGAAATGTACAGTGGCAATAATGCTGAGTTACCAACAATAACCGCAATATTGCTCTCTATATCCAATTTTCTTAAGC
AAAATATTGGCATTTTGCTATTTTTCGCTTTTAGTTGTTTTCTATTTTATAACTTCTATCTAAAACGCCAGACCTGGTTT
CATCAACAGAAAAATCAACTTATTTCTATCACGCCTATTTTTGGCACAATTCAAAATCTTTCACGTTTAGTGAACTTTAG
TCAAAGTTTACAAATTATGTTGCAGGCTGGCGTACCGCTTAATCAAGCACTAGAGAGTTTTCTCCCTCGCATACAAACGT
GGCAAACCAAGAAAACGCTTGTAAATGACATCGTATTAGATAAAGAAGTGCGGTCAATTTTACAATGGGTTTCTCAAGGT
TATGCCTTTTCTCATAGTGTAAGTAGCGATCTTTTCCCGATGGAAGCACAACAAATGCTACAAATTGGCGAGCAAAGCGG
AAAACTCGCTTTGATGCTAGAGCATATCGCGGATAATTACCAAGAAAAACTTAATCATCAAATTGACTTACTCTCACAAA
TGCTAGAGCCATTAATGATGGTGATCATCGGCAGTCTGATTGGAATTATTATGATGGGAATGTATTTACCTATCTTTAAT
ATGGGCGCAGTGATTTAA
ATGACTAAAAAACTTTTTTATTATCAAGGTAGTAACGCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACGAA
ACAACAAGCACACTTTCAATTAATAAGCCGCGGCCTTACTCACATCAGATTACAACAAAACTGGCAATTTGGGGCAAAGC
CCAAAAATTCAGAAATCAGTGAATTACTCAATCAATTAGCGACATTGCTACAGTCCGCAATTCCGTTAAAAAACAGTCTG
CAAATTTTGCAACAAAATTGTACTCAAATTATGCTCAATGAATGGCTTGAACGACTACTGCAATCCATTGAATCTGGTTT
AGCATTCTCACAGGCGATTGAACAACAAGGGAAATATCTCACACAACAAGAAATTCAACTGATTCAAGTGGGAGAAATGA
CGGGCAAACTTTCCGTTGTTTGTAAAAAAATAGCCACGCATCGTAGCCAATCTTTAGCATTACAACGCAAATTACAGAAA
ATTATGTTATACCCATCAATGGTGTTGGGAATTTCTCTATTATTGACACTCGCATTACTACTTTTTATCGTGCCTCAATT
TGCTGAAATGTACAGTGGCAATAATGCTGAGTTACCAACAATAACCGCAATATTGCTCTCTATATCCAATTTTCTTAAGC
AAAATATTGGCATTTTGCTATTTTTCGCTTTTAGTTGTTTTCTATTTTATAACTTCTATCTAAAACGCCAGACCTGGTTT
CATCAACAGAAAAATCAACTTATTTCTATCACGCCTATTTTTGGCACAATTCAAAATCTTTCACGTTTAGTGAACTTTAG
TCAAAGTTTACAAATTATGTTGCAGGCTGGCGTACCGCTTAATCAAGCACTAGAGAGTTTTCTCCCTCGCATACAAACGT
GGCAAACCAAGAAAACGCTTGTAAATGACATCGTATTAGATAAAGAAGTGCGGTCAATTTTACAATGGGTTTCTCAAGGT
TATGCCTTTTCTCATAGTGTAAGTAGCGATCTTTTCCCGATGGAAGCACAACAAATGCTACAAATTGGCGAGCAAAGCGG
AAAACTCGCTTTGATGCTAGAGCATATCGCGGATAATTACCAAGAAAAACTTAATCATCAAATTGACTTACTCTCACAAA
TGCTAGAGCCATTAATGATGGTGATCATCGGCAGTCTGATTGGAATTATTATGATGGGAATGTATTTACCTATCTTTAAT
ATGGGCGCAGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae 86-028NP |
96.049 |
100 |
0.96 |
| pilC | Haemophilus influenzae Rd KW20 |
95.802 |
100 |
0.958 |
| pilC | Glaesserella parasuis strain SC1401 |
39.5 |
98.765 |
0.39 |