Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C3V42_RS05965 Genome accession   NZ_CP027235
Coordinates   1232743..1233432 (+) Length   229 a.a.
NCBI ID   WP_048952810.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1227743..1238432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS05940 (C3V42_05945) rppH 1227913..1228503 (-) 591 WP_005631202.1 RNA pyrophosphohydrolase -
  C3V42_RS05945 (C3V42_05950) ampD 1229029..1229583 (-) 555 WP_106013960.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  C3V42_RS05950 (C3V42_05955) pilA 1229698..1230138 (+) 441 WP_106013961.1 prepilin peptidase-dependent pilin Machinery gene
  C3V42_RS05955 (C3V42_05960) pilB 1230135..1231529 (+) 1395 WP_106013962.1 GspE/PulE family protein Machinery gene
  C3V42_RS05960 (C3V42_05965) pilC 1231526..1232743 (+) 1218 WP_106013963.1 type II secretion system F family protein Machinery gene
  C3V42_RS05965 (C3V42_05970) pilD 1232743..1233432 (+) 690 WP_048952810.1 A24 family peptidase Machinery gene
  C3V42_RS05970 (C3V42_05975) era 1233667..1234575 (-) 909 WP_009766812.1 GTPase Era -
  C3V42_RS05975 (C3V42_05980) rnc 1234572..1235255 (-) 684 WP_106013964.1 ribonuclease III -
  C3V42_RS05980 (C3V42_05985) lepB 1235257..1236306 (-) 1050 WP_106013965.1 signal peptidase I -
  C3V42_RS05985 (C3V42_05990) lepA 1236315..1238111 (-) 1797 WP_106013966.1 translation elongation factor 4 -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25949.93 Da        Isoelectric Point: 7.2715

>NTDB_id=275951 C3V42_RS05965 WP_048952810.1 1232743..1233432(+) (pilD) [Haemophilus sp. oral taxon 036 strain F0629]
MIYLASFLFGGISGVVLWCYVSVFITCLQKDIYDAYIELFPENAPFFQPDASTIQQKKCGHILVYFFSVGFLFLFLHLIL
KNESLSLWAGVVLLMLWTMSYLDWHYQLISPTLCLALFALGVLGAYFYFSPLSLIESLQSSAGFFSVFGLIYGGAKVYYG
KEVFGKGDWWLSLGIGSFIPLSHLPHFLLIACLLGIVFTLVYRRKSQFLPFAPFMCISAIVLFIVQIYT

Nucleotide


Download         Length: 690 bp        

>NTDB_id=275951 C3V42_RS05965 WP_048952810.1 1232743..1233432(+) (pilD) [Haemophilus sp. oral taxon 036 strain F0629]
ATGATTTACTTAGCCTCATTTTTATTCGGCGGGATTAGTGGCGTAGTTTTATGGTGTTATGTATCAGTGTTTATTACTTG
TTTACAGAAAGATATTTACGATGCTTATATTGAATTGTTCCCAGAAAATGCCCCATTTTTTCAACCTGATGCTTCGACAA
TTCAACAGAAAAAGTGCGGTCATATTTTAGTTTACTTTTTTAGTGTCGGTTTTTTATTTCTCTTTTTGCATTTGATATTA
AAAAATGAATCCCTCTCATTATGGGCTGGAGTAGTACTTCTTATGCTTTGGACAATGAGTTACCTTGATTGGCATTATCA
ACTTATTTCTCCAACGCTTTGCTTAGCATTATTTGCTTTAGGCGTATTAGGGGCTTATTTCTATTTTTCCCCCTTATCGT
TAATCGAAAGCTTGCAAAGCTCAGCTGGTTTTTTCTCTGTTTTTGGTCTTATCTATGGAGGGGCAAAAGTTTATTATGGC
AAGGAAGTTTTTGGTAAAGGTGATTGGTGGTTGTCATTAGGGATAGGTAGCTTTATTCCATTGTCACATTTACCACACTT
TTTACTCATAGCGTGCTTATTAGGAATCGTTTTTACATTGGTTTATCGACGAAAATCCCAATTCTTACCCTTTGCACCTT
TTATGTGTATATCGGCAATCGTGTTATTTATTGTCCAAATTTATACTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(91-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

57.456

99.563

0.572
  pilD Haemophilus influenzae 86-028NP

56.579

99.563

0.563

Multiple sequence alignment