Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLMG_RS07485 Genome accession   NC_009004
Coordinates   1458396..1459046 (+) Length   216 a.a.
NCBI ID   WP_011835333.1    Uniprot ID   A2RL95
Organism   Lactococcus cremoris subsp. cremoris MG1363     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453396..1464046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLMG_RS07460 (llmg_1479) - 1453908..1454675 (-) 768 WP_011835328.1 5'-nucleotidase -
  LLMG_RS07465 (llmg_1480) - 1454785..1455804 (-) 1020 WP_011835329.1 DUF475 domain-containing protein -
  LLMG_RS07470 (llmg_1481) - 1455870..1456370 (-) 501 WP_011835330.1 VanZ family protein -
  LLMG_RS07475 (llmg_1482) - 1456412..1457047 (-) 636 WP_011835331.1 YigZ family protein -
  LLMG_RS07480 (llmg_1483) comFA 1457104..1458396 (+) 1293 WP_011835332.1 DEAD/DEAH box helicase Machinery gene
  LLMG_RS07485 (llmg_1484) comFC 1458396..1459046 (+) 651 WP_011835333.1 ComF family protein Machinery gene
  LLMG_RS07490 (llmg_1485) - 1459105..1459683 (-) 579 WP_011835334.1 nucleotidyltransferase family protein -
  LLMG_RS07495 (llmg_1486) - 1459700..1460155 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLMG_RS07500 (llmg_1487) ybeY 1460139..1460627 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LLMG_RS07505 (llmg_1488) - 1460857..1461345 (-) 489 WP_011835336.1 NUDIX hydrolase -
  LLMG_RS07510 (llmg_1489) - 1461415..1462383 (-) 969 WP_011835337.1 PhoH family protein -
  LLMG_RS07515 (llmg_1490) - 1462457..1463989 (-) 1533 WP_011835338.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25289.60 Da        Isoelectric Point: 9.8464

>NTDB_id=27466 LLMG_RS07485 WP_011835333.1 1458396..1459046(+) (comFC) [Lactococcus cremoris subsp. cremoris MG1363]
MQTCLLCSRIIKQTLTFSEFFLLKNKRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLRWEEKGIIVNHQAIFIYN
QEMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRTYLDLLEKEDTVSQSSLNRE
GRLSTTNPFKLKEGEKIPKKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=27466 LLMG_RS07485 WP_011835333.1 1458396..1459046(+) (comFC) [Lactococcus cremoris subsp. cremoris MG1363]
ATGCAAACATGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAAGAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAGGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGGCAATTTTTATTTATAAC
CAAGAAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCTATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGGTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAACTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGCCAATCAAGTCTTAATCGCGAG
GGACGTTTATCAACTACCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCAAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCTATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RL95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

98.507

62.037

0.611
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

100

0.5
  comFC/cflB Streptococcus pneumoniae Rx1

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae D39

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae R6

47.706

100

0.481
  comFC/cflB Streptococcus pneumoniae TIGR4

47.706

100

0.481
  comFC/cflB Streptococcus mitis SK321

47.706

100

0.481
  comFC Bacillus subtilis subsp. subtilis str. 168

34.361

100

0.361

Multiple sequence alignment