Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PNAP_RS00590 Genome accession   NC_008781
Coordinates   130589..132136 (-) Length   515 a.a.
NCBI ID   WP_011799554.1    Uniprot ID   A1VIG6
Organism   Polaromonas naphthalenivorans CJ2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 125589..137136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNAP_RS00580 (Pnap_0117) metH 126045..128864 (+) 2820 WP_011799552.1 methionine synthase -
  PNAP_RS00585 (Pnap_0118) - 129004..130506 (+) 1503 WP_041376428.1 YncE family protein -
  PNAP_RS00590 (Pnap_0119) comM 130589..132136 (-) 1548 WP_011799554.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PNAP_RS00595 (Pnap_0120) glnK 132475..132813 (+) 339 WP_011799555.1 P-II family nitrogen regulator -
  PNAP_RS00600 (Pnap_0121) - 132847..134412 (+) 1566 WP_011799556.1 ammonium transporter -
  PNAP_RS00605 (Pnap_0122) - 134558..135484 (+) 927 WP_011799557.1 SMP-30/gluconolactonase/LRE family protein -
  PNAP_RS00610 (Pnap_0123) glcE 135697..136845 (+) 1149 WP_011799558.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 54107.07 Da        Isoelectric Point: 8.8728

>NTDB_id=27267 PNAP_RS00590 WP_011799554.1 130589..132136(-) (comM) [Polaromonas naphthalenivorans CJ2]
MSLSLVHSRALLGLQAHPVCVEVHLANGLPSFTLVGLADTEVKEARERVRSAIQNAGLEFPGNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDARKLAGYEFAGELSLGGDVRPVRGALAMSLAIARPAHGGTARKLPRLVLPEGSAQEAALVPD
AEIYRAHHLLDVVRQFLPGDAVPEVADGWMRVASAAPSRQPAYADLADVKGQAAARRALEIAAAGGHSLLMVGSPGSGKS
MLAQRFAGLLPAMTTEEALETAAVASLGGRFTLDHWAVRPTCAPHHTASAVALVGGGSPPRPGEISLAHRGVLFLDELPE
FPRAALEALREPLESGSITISRAASRAEFPARFQLIAAMNPCPCGYLGSSLRACRCSPEQVSRYQGKLSGPLLDRIDLHV
EVGALAAGELVNTPPGEATETIRSRVVQARERAMSRQGSANQALQGQAIDAQCQLDATAAKFLNTAATRLGWSGRGIHRC
LKVARTIADLAGAKTVQLTHVAEAVQYRRALKAAH

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=27267 PNAP_RS00590 WP_011799554.1 130589..132136(-) (comM) [Polaromonas naphthalenivorans CJ2]
ATGAGCCTGTCTTTAGTGCATAGCCGTGCATTGCTGGGTCTGCAAGCGCACCCGGTGTGCGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCAGTTTCACGCTGGTCGGCCTGGCCGATACCGAAGTCAAGGAAGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAATGCCGGGCTGGAGTTTCCGGGCAACAAGCGCATCACGGTGAACCTGGCGCCGGCCGACCTGCCCAAGGATTCGGGC
CGCTTCGACCTGCCGATTGCGCTGGGCATCCTGGCGGCCAGCGGGCAGATTGATGCGCGCAAGCTGGCCGGCTATGAGTT
TGCCGGCGAGCTGTCGCTGGGCGGCGATGTGCGGCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCGATTGCCCGGCCGG
CGCATGGCGGCACGGCGCGCAAGCTGCCCCGGCTGGTGCTGCCCGAAGGCAGTGCGCAGGAAGCGGCGCTGGTGCCCGAT
GCCGAGATTTACCGCGCGCACCACCTGCTCGACGTGGTCAGGCAGTTCCTGCCGGGCGACGCCGTGCCCGAGGTGGCCGA
TGGCTGGATGCGCGTGGCTTCAGCCGCGCCGTCCCGGCAGCCCGCTTATGCGGACCTGGCCGATGTCAAGGGCCAGGCCG
CCGCGCGCCGGGCACTGGAGATTGCGGCCGCAGGCGGGCACAGCCTGTTGATGGTCGGCTCGCCGGGCTCGGGCAAGTCG
ATGCTGGCGCAGCGCTTTGCCGGCCTGCTGCCGGCCATGACGACCGAGGAAGCGCTGGAAACCGCCGCCGTCGCGTCGCT
GGGCGGGCGCTTCACGCTGGACCACTGGGCCGTGCGGCCGACCTGCGCGCCGCACCACACGGCCAGCGCGGTGGCGCTGG
TGGGCGGCGGCTCGCCGCCGCGTCCGGGTGAAATCTCGCTGGCGCATCGCGGGGTGCTGTTCCTCGACGAGCTGCCGGAA
TTTCCCCGCGCCGCGCTGGAAGCCCTGCGCGAGCCGCTGGAATCGGGCAGCATCACCATTTCACGGGCCGCGAGCCGCGC
CGAGTTCCCGGCGCGCTTTCAGCTCATCGCGGCCATGAACCCCTGCCCCTGCGGCTACCTGGGCTCCAGCCTGCGCGCCT
GCCGCTGCTCGCCGGAGCAGGTTTCGCGCTACCAGGGCAAGCTCAGCGGCCCCTTGCTGGACCGGATCGACCTGCATGTG
GAAGTCGGCGCGCTGGCGGCCGGCGAACTGGTGAACACGCCGCCGGGCGAAGCCACGGAAACCATCCGTAGCCGTGTCGT
GCAGGCCAGGGAGCGCGCCATGAGCCGGCAGGGCAGCGCCAACCAGGCGCTGCAAGGGCAGGCGATTGATGCGCAATGCC
AGCTCGATGCCACAGCGGCCAAGTTCCTCAATACCGCAGCCACCCGGCTGGGCTGGTCGGGCCGGGGCATTCACCGCTGC
CTGAAAGTGGCGCGCACCATTGCCGACCTGGCCGGCGCCAAAACGGTGCAACTCACGCATGTGGCCGAGGCCGTGCAGTA
CCGGCGGGCGCTGAAGGCGGCGCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1VIG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.539

99.417

0.522
  comM Vibrio cholerae strain A1552

52.242

99.612

0.52
  comM Glaesserella parasuis strain SC1401

51.362

99.806

0.513
  comM Vibrio campbellii strain DS40M4

51.267

99.612

0.511
  comM Legionella pneumophila str. Paris

49.323

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.323

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.33

100

0.423

Multiple sequence alignment