Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PING_RS02090 Genome accession   NC_008709
Coordinates   497259..498773 (+) Length   504 a.a.
NCBI ID   WP_011768812.1    Uniprot ID   A1SRY8
Organism   Psychromonas ingrahamii 37     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 492259..503773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PING_RS02065 (Ping_0387) thiQ 493572..494282 (+) 711 WP_011768807.1 thiamine ABC transporter ATP-binding protein -
  PING_RS02070 (Ping_0388) crp 494356..494994 (-) 639 WP_011768808.1 cAMP-activated global transcriptional regulator CRP -
  PING_RS02075 (Ping_0389) - 495244..495471 (-) 228 WP_011768809.1 YheU family protein -
  PING_RS02080 (Ping_0390) can 495945..496574 (+) 630 WP_011768810.1 carbonate dehydratase -
  PING_RS02085 (Ping_0391) - 496655..496960 (+) 306 WP_011768811.1 c-type cytochrome -
  PING_RS02090 (Ping_0392) comM 497259..498773 (+) 1515 WP_011768812.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PING_RS02095 (Ping_0393) - 498911..501769 (-) 2859 WP_011768813.1 valine--tRNA ligase -
  PING_RS02100 (Ping_0394) - 501773..502255 (-) 483 WP_011768814.1 DNA polymerase III subunit chi -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54713.29 Da        Isoelectric Point: 9.1992

>NTDB_id=27104 PING_RS02090 WP_011768812.1 497259..498773(+) (comM) [Psychromonas ingrahamii 37]
MALASLYCRALLGVDAPEVLVEVHLGTGLPSFSLVGLPETSVKEAKERVRSAILNSNFKFPSKRITVNLGPANLPKEGGR
FDLAIALGILIASEQIRGDGIDQFECFAELALSGELRPIDGLIPCALAAKEKGRYLIICPENQNESALTGAKAYVARNLI
GVCAFLQKQKTLPEAQAAPKTAAINQTDMSDVLGQEQAKRVLEIAAVGGHNLLLVGPPGTGKSMLAERFMTLLPRLTEKH
ALQTAAIYSVCGKQRDDWFEPPYRCPHHSASAVALVGGGGKPKPGEISLSHRGVLFLDELAEFPRSVLDSLRQPLESHKV
TISRAANQVTFPAHFQLIAAMNPSPCGHISGDLRRSTPDQILRYLGRLSGPFLDRFSLSIMVPLLPQGTLASSQVGHTLK
GESSEIIKTRVLKARDKQQQRQGKLNNALSTKEIASYCQLSLEDAQFLEQAINQMGLSIRAWHSLLKVARSIADLAGSVR
VERHHLTESLAYRAMDRLLKNLSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=27104 PING_RS02090 WP_011768812.1 497259..498773(+) (comM) [Psychromonas ingrahamii 37]
ATGGCACTTGCAAGTTTATACTGCCGCGCACTATTAGGAGTAGATGCACCCGAGGTACTAGTGGAGGTACATTTAGGCAC
TGGCTTGCCAAGTTTTTCGTTGGTTGGTTTACCGGAAACATCGGTCAAAGAAGCAAAAGAAAGAGTACGCAGTGCCATTC
TTAATAGTAACTTTAAATTTCCCAGCAAACGGATCACCGTTAATCTTGGACCTGCTAACTTACCTAAAGAGGGTGGACGA
TTTGATTTGGCGATCGCCCTCGGTATTTTAATTGCCTCGGAGCAAATTAGAGGCGATGGTATTGATCAGTTTGAATGTTT
TGCTGAACTCGCGTTATCAGGGGAACTGCGCCCTATTGATGGTTTAATTCCCTGTGCATTGGCTGCTAAAGAAAAAGGCC
GCTATTTAATTATTTGTCCCGAAAATCAAAATGAAAGTGCGTTAACCGGCGCGAAAGCTTATGTTGCACGCAACCTTATT
GGCGTCTGTGCCTTTTTACAAAAACAGAAAACGTTACCTGAAGCACAGGCCGCGCCTAAAACCGCAGCAATAAACCAAAC
CGATATGAGCGATGTATTAGGCCAGGAACAAGCAAAAAGGGTTTTAGAAATAGCCGCCGTTGGTGGGCATAACCTGCTTC
TAGTTGGCCCTCCCGGCACCGGAAAAAGCATGTTGGCGGAACGTTTTATGACCTTATTACCAAGGTTAACCGAAAAACAT
GCGCTACAAACCGCCGCTATCTATTCTGTCTGCGGCAAGCAACGGGATGATTGGTTTGAGCCGCCCTACCGATGCCCTCA
TCATAGTGCTTCCGCCGTTGCATTAGTGGGGGGAGGGGGCAAACCTAAACCGGGTGAAATATCACTTTCCCATCGTGGTG
TTTTATTTCTCGACGAATTAGCTGAATTTCCCCGATCAGTCTTAGACAGTTTACGCCAACCTCTGGAAAGCCATAAAGTC
ACTATTTCTCGAGCGGCAAATCAAGTCACTTTTCCTGCGCATTTTCAATTAATCGCAGCCATGAATCCAAGCCCCTGCGG
GCATATTAGTGGTGATTTAAGGCGCAGTACGCCGGATCAGATTTTACGTTATCTAGGGCGTTTATCGGGGCCATTTTTAG
ACCGATTTTCACTTTCTATTATGGTGCCTTTATTACCTCAAGGCACTTTGGCATCGTCTCAGGTTGGGCATACGCTCAAA
GGCGAAAGCAGTGAGATAATCAAAACTCGTGTGTTAAAAGCAAGAGATAAACAGCAGCAAAGGCAGGGCAAACTAAATAA
TGCTTTATCAACCAAGGAAATAGCCTCCTATTGCCAGTTGAGTCTTGAAGATGCACAGTTTTTAGAGCAGGCGATTAATC
AAATGGGATTATCGATTCGTGCCTGGCACAGTCTTTTAAAAGTGGCTCGAAGTATTGCAGATTTAGCCGGAAGCGTTAGA
GTAGAACGTCATCATCTGACTGAATCTCTTGCCTATCGTGCTATGGACCGTTTGTTAAAAAATCTGTCATTATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1SRY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.186

100

0.56
  comM Vibrio campbellii strain DS40M4

54.921

100

0.554
  comM Glaesserella parasuis strain SC1401

54.813

100

0.554
  comM Vibrio cholerae strain A1552

54.241

100

0.546
  comM Legionella pneumophila str. Paris

50.501

99.008

0.5
  comM Legionella pneumophila strain ERS1305867

50.501

99.008

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

100

0.442

Multiple sequence alignment