Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   VIBHAR_RS14390 Genome accession   NC_009783
Coordinates   3109351..3109950 (-) Length   199 a.a.
NCBI ID   WP_005432989.1    Uniprot ID   A0AAQ2XYN5
Organism   Vibrio campbellii ATCC BAA-1116     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3104351..3114950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS14365 (VIBHAR_03080) - 3104452..3105108 (-) 657 WP_012128590.1 transcriptional regulator -
  VIBHAR_RS14370 (VIBHAR_03081) - 3105137..3106414 (-) 1278 WP_012128591.1 serine dehydratase subunit alpha family protein -
  VIBHAR_RS14375 (VIBHAR_03082) - 3106429..3106809 (-) 381 WP_005432926.1 RidA family protein -
  VIBHAR_RS14380 (VIBHAR_03083) - 3107124..3108373 (+) 1250 Protein_2781 amino acid permease -
  VIBHAR_RS14385 (VIBHAR_03084) aqpZ 3108599..3109297 (+) 699 WP_005432982.1 aquaporin Z -
  VIBHAR_RS14390 (VIBHAR_03085) recR 3109351..3109950 (-) 600 WP_005432989.1 recombination mediator RecR Machinery gene
  VIBHAR_RS14395 (VIBHAR_03086) - 3109981..3110310 (-) 330 WP_005432961.1 YbaB/EbfC family nucleoid-associated protein -
  VIBHAR_RS14400 (VIBHAR_03087) dnaX 3110393..3112603 (-) 2211 WP_012128594.1 DNA polymerase III subunit gamma/tau -
  VIBHAR_RS14405 (VIBHAR_03088) apt 3112612..3113157 (-) 546 WP_012128595.1 adenine phosphoribosyltransferase -
  VIBHAR_RS14410 (VIBHAR_03089) - 3113324..3113728 (-) 405 WP_038891442.1 YbaN family protein -
  VIBHAR_RS31235 (VIBHAR_03090) - 3113744..3113875 (-) 132 WP_005432936.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.75 Da        Isoelectric Point: 5.7468

>NTDB_id=27003 VIBHAR_RS14390 WP_005432989.1 3109351..3109950(-) (recR) [Vibrio campbellii ATCC BAA-1116]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQAMTEIGHCTECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CKEHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=27003 VIBHAR_RS14390 WP_005432989.1 3109351..3109950(-) (recR) [Vibrio campbellii ATCC BAA-1116]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTTGGCCCCAAGTCGGCGCAGCG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGACGCGCTTAGCCAAGCAATGACAGAAA
TTGGCCATTGCACCGAGTGTCGTACTTTCACTGAAGAAGAAGTTTGTCATATTTGTACTAACCCAAAACGCCAAGAAAAT
GGTCAGATTTGTGTGGTAGAAAGTCCGGCAGACATCGCAGCAGTAGAAGCAACGGGGCAATACTCGGGTCGATACTTTGT
ACTGATGGGACATTTATCGCCGCTGGACGGAATTGGTCCAAGTGATATTGGTCTAGATGTATTGGATTACCGTCTGCGCC
GCGGAGATATCTCTGAGGTGATTCTCGCTACCAACCCAACGGTAGAAGGGGAAGCGACGGCTCATTACATCGCAGAACTT
TGTAAAGAACACCAAGTGGAAGCAAGCCGCATTGCACACGGTGTACCAGTGGGTGGCGAGCTTGAGCTCGTGGACGGGAC
TACCTTGTCACACTCCCTTCTGGGTCGACACAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2XYN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

100

0.452
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

100

0.442
  recR Streptococcus pneumoniae R6

37.306

96.985

0.362

Multiple sequence alignment