Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FTN_RS08555 Genome accession   NC_008601
Coordinates   1778924..1780432 (-) Length   502 a.a.
NCBI ID   WP_003041289.1    Uniprot ID   A0A6I4RT59
Organism   Francisella tularensis subsp. novicida U112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1773924..1785432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FTN_RS08535 (FTN_1661) nusA 1775671..1777140 (-) 1470 WP_003041283.1 transcription termination factor NusA -
  FTN_RS08540 (FTN_1662) rimP 1777158..1777610 (-) 453 WP_003024580.1 ribosome maturation factor RimP -
  FTN_RS08550 (FTN_1664) hemE 1777836..1778870 (-) 1035 WP_003041286.1 uroporphyrinogen decarboxylase -
  FTN_RS08555 (FTN_1665) comM 1778924..1780432 (-) 1509 WP_003041289.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FTN_RS08560 (FTN_1666) - 1780434..1780628 (-) 195 WP_003037729.1 accessory factor UbiK family protein -
  FTN_RS08565 (FTN_1667) - 1780704..1782155 (-) 1452 WP_003041292.1 NADH-quinone oxidoreductase subunit N -
  FTN_RS08570 (FTN_1668) - 1782171..1783760 (-) 1590 WP_003022912.1 complex I subunit 4 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55095.67 Da        Isoelectric Point: 8.8744

>NTDB_id=26998 FTN_RS08555 WP_003041289.1 1778924..1780432(-) (comM) [Francisella tularensis subsp. novicida U112]
MSLAVLKSRAQLGIEAPLVCIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQVNIVENIDEYEFAGELSLSGELRKISSAIPMAIKCVEENKKLIVPTQNNKEIGLVESVKAYGFDS
LNEVVEFLSGTKKEPIKPSVEIDFAKLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGSVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSIQAIRRYQSKLSGPLLDRIDLHVEVLELAKEDLTNQQ
LRGEKSSIIRERVKRARDRQVSRQGKINAMLSSKELDKVCNLNNETKKMLTMAIEKLGLSARGYYKILKVARTIADLNST
ENIDKTAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=26998 FTN_RS08555 WP_003041289.1 1778924..1780432(-) (comM) [Francisella tularensis subsp. novicida U112]
ATGTCTCTAGCAGTTCTAAAGAGTCGCGCACAACTTGGTATTGAGGCACCTCTTGTTTGTATAGAAGTACATTTATCAAA
TGGTTTGCCAGGTTTATCAATAGTGGGGTTACCAGAGGCAGCTGTTAAAGAAAGTAAAGATCGTGTTAGAAGTGCAATTA
TCAATTCAGGCTTTAATTTTCCTAATAAGCGTATCACAATCAATCTTGCTCCAGCTGACTTGCCTAAGAGTAGTGGTAGA
TTTGATTTGCCAATTGCATTAGGTATTTTGTATGCATCTGGGCAAGTAAATATTGTTGAAAATATCGATGAGTATGAATT
CGCTGGTGAGTTATCTTTAAGTGGTGAACTAAGAAAAATATCCAGTGCTATACCGATGGCTATTAAATGTGTTGAGGAAA
ATAAAAAACTTATTGTACCAACACAAAATAATAAAGAGATTGGTTTGGTTGAGTCAGTTAAAGCTTATGGCTTTGATAGT
TTAAATGAGGTCGTTGAGTTTTTATCTGGGACTAAAAAAGAGCCAATAAAACCCAGTGTTGAGATTGATTTTGCTAAGCT
ATATCAAGATTTAGAGGATGTCAAAGGACAATATCAAGCAAAAAGAGCATTAGAAATCGCCGCGGCAGGTGGGCATAATA
TTCTTTTAGTAGGTCCTCCGGGTACCGGTAAGACAATGTTGGCAAGTAGGCTAAATTCGATCTTACCACCATTAGATAAA
AAAGAAGCGCTTTCATCGGCAATGATCGCATCAATTAAAGGAGAGTCAGGAATCGCTGAAAGCTTTTATAAAAGACCATT
TCGTCATCCGCATCATACCTCATCAGGAGTATCTTTGGTTGGTGGTGGCAGTAATCCAATGCCAGGTGAGATTTCCTTAG
CACACAATGGTGTGCTTTTTCTTGATGAGTTACCAGAGTTTGATCGCAAAGTTTTAGAAGTATTGCGTGAGCCTTTGGAG
ACAGGAAGTGTGAATATCTCAAGAGCTAGATGTCAAGTCGAATATCCAGCTAATTTTCAGTTAATAGCAGCAATGAATCC
ATGTCCATGTGGATATTTAGGCTCACAATTTAAAGAGTGTACTGATTCAATCCAAGCGATTAGAAGATATCAAAGTAAAT
TATCTGGCCCACTTCTAGATAGGATAGATCTTCATGTTGAAGTTCTTGAGCTTGCAAAAGAGGATCTAACAAATCAGCAG
TTAAGAGGTGAGAAAAGTAGCATAATTAGAGAGCGAGTTAAAAGGGCTCGAGATAGACAAGTCTCTCGACAGGGTAAGAT
TAACGCAATGCTATCTAGTAAAGAGCTTGATAAGGTTTGTAATCTTAATAATGAAACAAAAAAAATGCTTACAATGGCTA
TAGAAAAGCTTGGACTATCAGCAAGAGGGTATTATAAAATACTCAAAGTTGCTAGAACTATAGCAGACCTTAATAGTACA
GAAAATATTGATAAAACAGCTATTCAAGAAGCTATTAGTTATAGAAAAATGGATAAGTTTATCAAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4RT59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.183

100

0.524
  comM Glaesserella parasuis strain SC1401

51.874

100

0.524
  comM Vibrio cholerae strain A1552

51.786

100

0.52
  comM Haemophilus influenzae Rd KW20

50.984

100

0.516
  comM Legionella pneumophila str. Paris

51.406

99.203

0.51
  comM Legionella pneumophila strain ERS1305867

51.406

99.203

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.598

99.203

0.492

Multiple sequence alignment