Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C1N50_RS16450 Genome accession   NZ_CP026321
Coordinates   3436452..3437975 (-) Length   507 a.a.
NCBI ID   WP_103413742.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431452..3442975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS16425 (C1N50_16420) - 3431500..3432486 (+) 987 WP_077262499.1 serine/threonine protein kinase -
  C1N50_RS16430 (C1N50_16425) - 3432521..3433123 (+) 603 WP_005429765.1 thiol:disulfide interchange protein DsbA/DsbL -
  C1N50_RS16435 (C1N50_16430) - 3433459..3434337 (-) 879 WP_005429796.1 acyltransferase -
  C1N50_RS16440 (C1N50_16435) - 3434507..3435463 (+) 957 WP_103413740.1 DUF2860 domain-containing protein -
  C1N50_RS16445 (C1N50_16440) - 3435608..3436441 (+) 834 WP_103413741.1 sensor domain-containing diguanylate cyclase -
  C1N50_RS16450 (C1N50_16445) comM 3436452..3437975 (-) 1524 WP_103413742.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C1N50_RS16455 (C1N50_16450) ilvG 3438438..3440084 (+) 1647 WP_103413743.1 acetolactate synthase 2 catalytic subunit -
  C1N50_RS16460 (C1N50_16455) ilvM 3440096..3440380 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  C1N50_RS16465 (C1N50_16460) ilvE 3440393..3441331 (+) 939 WP_005429790.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54907.97 Da        Isoelectric Point: 8.8465

>NTDB_id=268146 C1N50_RS16450 WP_103413742.1 3436452..3437975(-) (comM) [Vibrio campbellii strain BoB-53]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIDAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=268146 C1N50_RS16450 WP_103413742.1 3436452..3437975(-) (comM) [Vibrio campbellii strain BoB-53]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCATATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTGCTGCCAGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCATTTAGTGGTGCCTCATGCCAATGGTGATCAGGCGGCTCTTGTTGGCAAGGAGCAGCATAAATCAGCCCAATCACTG
CTTGAGGTGTGTGCCGAACTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATAGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACATAACTGGAAGACGCGGCCGTT
TCGTGCTCCGCATCATTCCAGCTCAATGGCGGCTTTAGTTGGTGGTGGATCTGTACCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTATTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCCACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGTAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGATGCCTTCTGCCCGTTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGTTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGTATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.803

100

0.998
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

63.725

100

0.641
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment