Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C0971_RS12025 Genome accession   NZ_CP026143
Coordinates   2373967..2375658 (-) Length   563 a.a.
NCBI ID   WP_248891809.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2368967..2380658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS12005 (C0971_12065) - 2368978..2370423 (+) 1446 Protein_2338 IS1182 family transposase -
  C0971_RS12010 (C0971_12070) - 2370407..2371309 (-) 903 WP_248891807.1 tyrosine-type recombinase/integrase -
  C0971_RS12015 (C0971_12075) spo0A 2371474..2372265 (-) 792 WP_004435551.1 sporulation transcription factor Spo0A Regulator
  C0971_RS12020 (C0971_12080) spoIVB 2372553..2373842 (-) 1290 WP_248891808.1 SpoIVB peptidase -
  C0971_RS12025 (C0971_12085) recN 2373967..2375658 (-) 1692 WP_248891809.1 DNA repair protein RecN Machinery gene
  C0971_RS12030 (C0971_12090) argR 2375675..2376124 (-) 450 WP_004435554.1 transcriptional regulator ArgR -
  C0971_RS12035 (C0971_12095) - 2376347..2377189 (-) 843 WP_248891811.1 TlyA family RNA methyltransferase -
  C0971_RS12040 (C0971_12100) dxs 2377193..2379088 (-) 1896 WP_004435556.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C0971_RS12045 (C0971_12105) - 2379287..2380177 (-) 891 WP_248891812.1 polyprenyl synthetase family protein -
  C0971_RS12050 (C0971_12110) - 2380180..2380410 (-) 231 WP_034669383.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63572.62 Da        Isoelectric Point: 4.8504

>NTDB_id=267522 C0971_RS12025 WP_248891809.1 2373967..2375658(-) (recN) [Bacillus methanolicus strain DFS2]
MLSELSIRNFAIIDALSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSSEFVRHGEDKAEIEGLFLLDDESHPCYEK
AREFGIEIEEGMIVLKRDISKQGKSVCRINGKLVTISVLREVGSTLVDIHGQHEHQELMDETMHLPLLDQFGAEEISKAV
EEYQEVYRAYEKTMKKLKSLNENEQQMAHRLDLIQFQLEEIQSAQLKLNEDEELYEEKRKLSNFERIYEALQLGYSALQG
EQKGLDWLGLVMSNLEDAAELNPAYKDLFETVSNSYYALEDVSHTLRNELDLLEFDPQRLNEIEDRLNEINALKRKYGKT
IEEILEYAATIEEEVETLQNKETHIGQLEKELASLRKDLLIEAKNLTELRKKYAKKLTKLIHQELKDLYMAKTVFEVKIE
SDENNFTKNGIDKAEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVSIGSQVLCISHLPQVAAMADTHLFISKVTKAGRTITSVTPLSDVEKIKEIGRMISGVEITDLTKKHAEELLLLANQIK
TTT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=267522 C0971_RS12025 WP_248891809.1 2373967..2375658(-) (recN) [Bacillus methanolicus strain DFS2]
TTGTTAAGCGAACTATCCATTCGAAATTTTGCAATTATAGACGCCCTTTCTATTTCTTTTGAAAAGGGTTTAACCGTTTT
AACGGGAGAGACGGGGGCAGGTAAATCGATTATCATCGATGCCATTCATTTGTTAATTGGCGGAAGAGGGTCATCTGAAT
TTGTCCGCCACGGGGAAGATAAAGCAGAAATTGAAGGTCTATTTTTGTTGGATGATGAAAGCCATCCGTGCTATGAAAAA
GCAAGAGAATTCGGCATTGAAATTGAAGAAGGCATGATCGTTTTAAAACGGGACATTTCGAAGCAGGGAAAAAGTGTATG
CCGAATAAACGGGAAATTGGTCACGATTTCTGTGTTGCGGGAAGTTGGAAGCACCTTAGTTGATATTCATGGCCAGCATG
AACATCAGGAATTAATGGACGAAACTATGCATTTGCCTTTGCTGGATCAATTTGGAGCAGAGGAAATTTCCAAAGCGGTT
GAGGAATATCAGGAAGTTTACCGGGCTTATGAGAAAACAATGAAAAAACTGAAAAGTCTGAATGAAAATGAACAGCAAAT
GGCTCACCGTCTTGACTTAATCCAATTTCAGTTAGAGGAAATTCAGTCTGCCCAACTCAAACTGAATGAAGATGAAGAGC
TTTACGAAGAAAAACGAAAACTCAGCAATTTTGAACGAATATATGAAGCACTGCAATTAGGCTATTCAGCACTTCAAGGA
GAACAAAAAGGTTTGGATTGGCTCGGCCTAGTGATGAGCAATCTTGAAGATGCTGCTGAATTGAATCCTGCTTACAAGGA
CCTATTTGAAACAGTTTCCAACAGTTATTATGCGCTTGAAGATGTTTCCCATACACTTAGAAATGAACTTGATTTGCTTG
AATTTGATCCTCAGCGTTTAAATGAAATTGAAGACAGGCTCAATGAAATCAATGCGTTAAAACGGAAATACGGAAAAACA
ATCGAAGAAATACTTGAATATGCAGCAACAATTGAAGAAGAAGTTGAAACACTGCAAAACAAAGAAACACATATCGGGCA
ATTGGAAAAAGAACTTGCTTCTTTAAGAAAAGATTTATTAATTGAAGCAAAGAATTTAACAGAACTGAGAAAGAAATATG
CAAAAAAATTGACGAAACTGATCCATCAGGAATTAAAAGATCTGTACATGGCCAAAACAGTATTTGAAGTAAAAATTGAA
TCAGATGAAAATAATTTTACGAAAAATGGAATCGATAAAGCGGAATTTTATATTTCCACTAACCCCGGAGAACCGCTAAA
GCCATTGTCAAAAGTCGCGTCAGGGGGAGAGCTTTCGAGAATTATGCTGGCGTTAAAGAGCATATTCTCGAAACACCAGG
GTGTTACATCGATCATTTTTGACGAAGTGGATACAGGTGTCAGCGGAAGAGTTGCCCAGGCAATAGCTGAAAAAATATAC
AAAGTTTCTATTGGCTCTCAAGTGCTTTGCATTTCCCATCTGCCGCAAGTAGCCGCAATGGCCGATACTCATTTGTTCAT
TTCGAAAGTAACAAAGGCCGGAAGAACGATCACTTCGGTCACTCCTTTATCTGATGTTGAAAAAATAAAAGAAATCGGCA
GAATGATATCTGGTGTTGAAATTACGGATTTAACGAAAAAACATGCAGAGGAATTATTACTGCTTGCCAACCAAATAAAA
ACAACAACTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.715

100

0.652

Multiple sequence alignment