Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C0971_RS12570 Genome accession   NZ_CP026143
Coordinates   2482361..2483116 (-) Length   251 a.a.
NCBI ID   WP_248893999.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2477361..2488116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS12555 (C0971_12625) - 2478997..2479797 (-) 801 WP_248893998.1 pyruvate, water dikinase regulatory protein -
  C0971_RS12560 (C0971_12630) - 2479844..2480479 (-) 636 WP_283108022.1 helix-turn-helix transcriptional regulator -
  C0971_RS12565 (C0971_12635) - 2480687..2482069 (-) 1383 WP_004435791.1 glycine--tRNA ligase -
  C0971_RS12570 (C0971_12640) recO 2482361..2483116 (-) 756 WP_248893999.1 DNA repair protein RecO Machinery gene
  C0971_RS12575 (C0971_12645) - 2483148..2483291 (-) 144 WP_004435793.1 YqzL family protein -
  C0971_RS12580 (C0971_12650) era 2483451..2484371 (-) 921 WP_004435794.1 GTPase Era -
  C0971_RS12585 (C0971_12655) - 2484364..2484762 (-) 399 WP_283108023.1 cytidine deaminase -
  C0971_RS12590 (C0971_12660) - 2485153..2485557 (-) 405 WP_248891897.1 diacylglycerol kinase family protein -
  C0971_RS12595 (C0971_12665) ybeY 2485535..2486005 (-) 471 WP_248891898.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28732.28 Da        Isoelectric Point: 8.7490

>NTDB_id=267525 C0971_RS12570 WP_248893999.1 2482361..2483116(-) (recO) [Bacillus methanolicus strain DFS2]
MLQKCEGIVLRTTDYGEANKVVTLYTREWGKIGVMARGAKKANSRLSAVTQIFTYGYFLIQKGSGLGSLQQGEILSSMRL
IREDIFLTAYASYILELTDKSTEEKKSNPYHFELLLQILKFMNEGYDLDILTNIYEMKMLNSLGLYPELNHCTFCGNTDG
HFSFSIREGGFICHRCIEKDPYALKISSATAKLLRLFYYFDLSRLGNISVKPDTKAELKKVISAYYDEYSGLQLKTKKFL
NQIDKMRDLLS

Nucleotide


Download         Length: 756 bp        

>NTDB_id=267525 C0971_RS12570 WP_248893999.1 2482361..2483116(-) (recO) [Bacillus methanolicus strain DFS2]
ATGCTTCAAAAGTGTGAAGGCATCGTCTTAAGGACAACAGATTATGGTGAAGCAAATAAAGTTGTTACATTATATACCCG
TGAGTGGGGAAAGATTGGTGTGATGGCGCGAGGGGCAAAAAAGGCGAACAGCCGCCTTTCTGCCGTCACCCAGATTTTTA
CATATGGATACTTTTTAATTCAAAAAGGCAGCGGTCTTGGCAGCTTGCAGCAAGGTGAAATATTATCCTCAATGCGTTTG
ATTCGAGAGGATATTTTTTTAACTGCATATGCGAGTTACATTTTGGAACTGACGGATAAAAGCACTGAGGAAAAAAAATC
AAATCCTTATCATTTTGAATTGCTGCTTCAAATTTTGAAATTTATGAATGAAGGGTATGACCTCGATATTTTAACGAATA
TATATGAAATGAAAATGCTCAATTCTTTGGGGCTCTATCCTGAATTAAATCACTGTACCTTTTGCGGCAACACAGATGGG
CATTTTTCTTTTTCAATCCGGGAAGGGGGATTTATTTGCCACCGGTGTATTGAAAAAGATCCTTATGCGCTTAAAATTTC
CTCTGCAACTGCTAAATTACTGAGGCTTTTCTATTATTTTGACCTTTCAAGGCTTGGAAATATTTCAGTTAAACCGGACA
CAAAAGCGGAATTGAAAAAAGTTATTTCTGCTTATTATGATGAATACTCAGGTTTGCAATTAAAGACGAAGAAATTCTTG
AATCAAATTGATAAAATGCGTGATTTGCTGTCATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

68.4

99.602

0.681

Multiple sequence alignment