Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C2U31_RS16870 Genome accession   NZ_CP026124
Coordinates   3665848..3667386 (+) Length   512 a.a.
NCBI ID   WP_103273811.1    Uniprot ID   A0A2I8DK85
Organism   Achromobacter sp. AONIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3660848..3672386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U31_RS16845 (C2U31_16845) ptsP 3660852..3662546 (+) 1695 WP_103273807.1 phosphoenolpyruvate--protein phosphotransferase -
  C2U31_RS16850 (C2U31_16850) amt 3662671..3663909 (-) 1239 WP_103273808.1 ammonium transporter -
  C2U31_RS16855 (C2U31_16855) - 3663943..3664281 (-) 339 WP_043545226.1 P-II family nitrogen regulator -
  C2U31_RS16860 (C2U31_16860) - 3664883..3665281 (+) 399 WP_103273809.1 DUF5339 family protein -
  C2U31_RS16865 (C2U31_16865) - 3665484..3665735 (+) 252 WP_103273810.1 accessory factor UbiK family protein -
  C2U31_RS16870 (C2U31_16870) comM 3665848..3667386 (+) 1539 WP_103273811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C2U31_RS16875 (C2U31_16875) rpmI 3667870..3668067 (+) 198 WP_006387997.1 50S ribosomal protein L35 -
  C2U31_RS16880 (C2U31_16880) rplT 3668085..3668444 (+) 360 WP_006387998.1 50S ribosomal protein L20 -
  C2U31_RS16885 (C2U31_16885) pheS 3668521..3669543 (+) 1023 WP_103273812.1 phenylalanine--tRNA ligase subunit alpha -
  C2U31_RS16890 (C2U31_16890) pheT 3669562..3671979 (+) 2418 WP_103273813.1 phenylalanine--tRNA ligase subunit beta -
  C2U31_RS16895 (C2U31_16895) - 3671982..3672320 (+) 339 WP_103273814.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53433.61 Da        Isoelectric Point: 9.2111

>NTDB_id=267349 C2U31_RS16870 WP_103273811.1 3665848..3667386(+) (comM) [Achromobacter sp. AONIH1]
MSLAVLASRALSGAHAHVVRVETHLGPGLPGFNVVGLPDAGVRESRERVRAAIINSGFEFPAGRITVNLSPADLPKESGR
FDLPIALGLLLASGQLPGPPSAGDAGGKPPAMPASESILARLVLAGELSLTGALTPVTAPLLIALGVARDQPDATLVLPA
GSAEQAAWVPGLRVLSARSLADVAAHITGAHALPDAVPAPWPEPPPVPCLSDVRGQPAARRALEVAAAGGHSLLMVGPPG
AGKSMLAQRLPGLLPPLSRTQALEAAAVAALAGHAQAPAGQPPFRAPHHSLSVPALVGGGTHPRPGEISLAHHGVLFLDE
LPEFNRRTLESLREPLETGRVLISRAMRTARFPARFQLVAAMNPCPCGWRGHPARACACTPDQVARYAGRVSGPLLDRID
LHLRLPPVAPEDLDGPPGEASPAVRERVLACRGRQLERQDKPNAALAGAELDCHCALDESGRELLRQAMRRLRGSARVLH
RTLRVARTIADLEGAERLGARHVAQAVQYRAE

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=267349 C2U31_RS16870 WP_103273811.1 3665848..3667386(+) (comM) [Achromobacter sp. AONIH1]
TTGTCCCTTGCCGTACTCGCCAGCCGCGCGCTCAGCGGCGCTCATGCCCATGTCGTGCGGGTCGAGACCCATCTCGGCCC
GGGACTGCCGGGCTTCAATGTGGTCGGCCTGCCCGATGCTGGCGTGCGGGAAAGCCGCGAACGGGTGCGCGCCGCCATCA
TCAACAGCGGCTTCGAGTTTCCTGCCGGCCGCATCACCGTCAACCTGTCGCCGGCCGACCTGCCCAAGGAATCGGGCCGC
TTCGACCTGCCGATCGCGCTTGGGCTGTTGCTGGCATCGGGGCAGTTGCCGGGGCCGCCATCCGCAGGCGACGCGGGCGG
CAAGCCGCCCGCCATGCCGGCGTCCGAGTCCATACTGGCGCGCCTGGTCCTGGCGGGCGAGCTGTCGCTGACCGGCGCGC
TGACGCCTGTCACGGCGCCGCTGCTGATCGCGCTGGGCGTGGCGCGCGATCAGCCCGACGCGACGCTCGTCCTGCCCGCC
GGCAGCGCGGAGCAGGCGGCCTGGGTGCCCGGCCTGCGGGTGTTGTCGGCTCGCAGCCTGGCGGACGTAGCGGCGCACAT
CACGGGCGCGCATGCCTTGCCCGACGCGGTGCCGGCGCCCTGGCCTGAGCCGCCGCCCGTGCCTTGCCTGTCCGACGTGC
GCGGCCAGCCGGCGGCGCGGCGCGCGCTGGAGGTGGCGGCCGCCGGCGGTCACAGCCTGCTGATGGTGGGGCCCCCGGGG
GCGGGCAAGAGCATGCTGGCGCAGCGGCTGCCGGGCCTGTTGCCGCCGCTGTCGCGCACGCAGGCGCTGGAGGCCGCTGC
CGTGGCGGCGCTGGCCGGTCATGCGCAGGCGCCCGCGGGGCAGCCGCCATTCCGGGCGCCGCATCATTCCCTGTCCGTAC
CGGCGCTGGTGGGTGGCGGCACCCATCCCCGGCCCGGAGAGATCAGCCTGGCGCATCACGGCGTGCTGTTCCTGGACGAA
CTGCCCGAATTCAACCGACGCACGCTGGAATCGCTGCGCGAGCCGCTGGAAACCGGCCGGGTGCTGATCTCGCGGGCCAT
GCGCACGGCGCGGTTTCCGGCCCGCTTCCAGCTGGTCGCGGCCATGAATCCTTGCCCCTGCGGGTGGCGCGGACATCCGG
CGCGGGCCTGCGCCTGCACGCCCGATCAGGTGGCGCGCTACGCGGGCCGCGTCTCCGGCCCCTTGCTGGACCGCATCGAC
CTGCATCTGCGCTTGCCGCCGGTGGCCCCGGAAGACCTGGACGGGCCGCCGGGGGAGGCCTCGCCGGCGGTGCGCGAGCG
GGTCCTGGCCTGCCGTGGGCGGCAATTGGAACGTCAGGACAAGCCCAACGCGGCCTTGGCCGGCGCGGAGCTGGACTGTC
ATTGCGCGCTGGACGAGAGCGGGCGGGAGTTGCTGCGGCAAGCCATGCGCCGCCTGCGCGGCTCGGCCCGCGTGCTGCAC
CGGACGCTGCGGGTGGCGCGCACGATCGCCGACCTGGAGGGCGCGGAACGGCTGGGCGCCCGGCATGTCGCGCAGGCGGT
GCAGTACCGGGCGGAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Subunit ChlI of Mg-chelatase (ChlI)

(21-96)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(210-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I8DK85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.936

100

0.494
  comM Vibrio campbellii strain DS40M4

48.549

100

0.49
  comM Haemophilus influenzae Rd KW20

46.257

100

0.471
  comM Legionella pneumophila str. Paris

44.402

100

0.457
  comM Legionella pneumophila strain ERS1305867

44.402

100

0.457
  comM Glaesserella parasuis strain SC1401

43.57

100

0.443
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.683

100

0.426

Multiple sequence alignment