Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   C2H93_RS10445 Genome accession   NZ_CP026036
Coordinates   2062452..2062883 (-) Length   143 a.a.
NCBI ID   WP_249852185.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057452..2067883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS10395 (C2H93_10415) sinI 2057646..2057819 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  C2H93_RS10400 (C2H93_10420) sinR 2057853..2058188 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C2H93_RS10405 (C2H93_10425) tasA 2058280..2059065 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  C2H93_RS10410 (C2H93_10430) sipW 2059130..2059702 (-) 573 WP_249852808.1 signal peptidase I SipW -
  C2H93_RS10415 (C2H93_10435) tapA 2059686..2060447 (-) 762 WP_249852183.1 amyloid fiber anchoring/assembly protein TapA -
  C2H93_RS10420 (C2H93_10440) yqzG 2060718..2061044 (+) 327 WP_038829733.1 YqzG/YhdC family protein -
  C2H93_RS10425 (C2H93_10445) spoIIT 2061086..2061265 (-) 180 WP_014480252.1 YqzE family protein -
  C2H93_RS10430 (C2H93_10450) comGG 2061337..2061711 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  C2H93_RS10435 (C2H93_10455) comGF 2061712..2062095 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  C2H93_RS10440 (C2H93_10460) comGE 2062121..2062468 (-) 348 WP_249852184.1 ComG operon protein 5 Machinery gene
  C2H93_RS10445 (C2H93_10465) comGD 2062452..2062883 (-) 432 WP_249852185.1 competence type IV pilus minor pilin ComGD Machinery gene
  C2H93_RS10450 (C2H93_10470) comGC 2062873..2063169 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  C2H93_RS10455 (C2H93_10475) comGB 2063183..2064220 (-) 1038 WP_086344083.1 comG operon protein ComGB Machinery gene
  C2H93_RS10460 (C2H93_10480) comGA 2064207..2065277 (-) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  C2H93_RS10465 (C2H93_10485) - 2065488..2065685 (-) 198 WP_072173931.1 hypothetical protein -
  C2H93_RS10470 (C2H93_10490) corA 2065687..2066640 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16152.71 Da        Isoelectric Point: 9.6750

>NTDB_id=265621 C2H93_RS10445 WP_249852185.1 2062452..2062883(-) (comGD) [Bacillus subtilis strain PK5_16]
MNIKLNEEEGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQAAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVIGHDAYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=265621 C2H93_RS10445 WP_249852185.1 2062452..2062883(-) (comGD) [Bacillus subtilis strain PK5_16]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTACT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGGCTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAATAGGCCATGACGCTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

93.706

100

0.937

Multiple sequence alignment