Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | C2H93_RS10400 | Genome accession | NZ_CP026036 |
| Coordinates | 2057853..2058188 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain PK5_16 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2052853..2063188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H93_RS10380 (C2H93_10395) | gcvT | 2053444..2054532 (-) | 1089 | WP_038829737.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| C2H93_RS10385 (C2H93_10400) | yqhH | 2054974..2056647 (+) | 1674 | WP_032726152.1 | SNF2-related protein | - |
| C2H93_RS10390 (C2H93_10405) | yqhG | 2056668..2057462 (+) | 795 | WP_032726154.1 | YqhG family protein | - |
| C2H93_RS10395 (C2H93_10415) | sinI | 2057646..2057819 (+) | 174 | WP_014477323.1 | anti-repressor SinI | Regulator |
| C2H93_RS10400 (C2H93_10420) | sinR | 2057853..2058188 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| C2H93_RS10405 (C2H93_10425) | tasA | 2058280..2059065 (-) | 786 | WP_014477324.1 | biofilm matrix protein TasA | - |
| C2H93_RS10410 (C2H93_10430) | sipW | 2059130..2059702 (-) | 573 | WP_249852808.1 | signal peptidase I SipW | - |
| C2H93_RS10415 (C2H93_10435) | tapA | 2059686..2060447 (-) | 762 | WP_249852183.1 | amyloid fiber anchoring/assembly protein TapA | - |
| C2H93_RS10420 (C2H93_10440) | yqzG | 2060718..2061044 (+) | 327 | WP_038829733.1 | YqzG/YhdC family protein | - |
| C2H93_RS10425 (C2H93_10445) | spoIIT | 2061086..2061265 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| C2H93_RS10430 (C2H93_10450) | comGG | 2061337..2061711 (-) | 375 | WP_064671036.1 | ComG operon protein ComGG | Machinery gene |
| C2H93_RS10435 (C2H93_10455) | comGF | 2061712..2062095 (-) | 384 | WP_032726158.1 | ComG operon protein ComGF | Machinery gene |
| C2H93_RS10440 (C2H93_10460) | comGE | 2062121..2062468 (-) | 348 | WP_249852184.1 | ComG operon protein 5 | Machinery gene |
| C2H93_RS10445 (C2H93_10465) | comGD | 2062452..2062883 (-) | 432 | WP_249852185.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| C2H93_RS10450 (C2H93_10470) | comGC | 2062873..2063169 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=265617 C2H93_RS10400 WP_003226345.1 2057853..2058188(+) (sinR) [Bacillus subtilis strain PK5_16]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=265617 C2H93_RS10400 WP_003226345.1 2057853..2058188(+) (sinR) [Bacillus subtilis strain PK5_16]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |