Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DV119_RS05665 Genome accession   NZ_CP031245
Coordinates   1026135..1027184 (+) Length   349 a.a.
NCBI ID   WP_050221199.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1021135..1032184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS05640 - 1022358..1022714 (+) 357 WP_000114433.1 hypothetical protein -
  DV119_RS05645 dnaJ 1023116..1024252 (+) 1137 WP_050073039.1 molecular chaperone DnaJ -
  DV119_RS05650 - 1024632..1024919 (-) 288 WP_000777760.1 hypothetical protein -
  DV119_RS05655 - 1024929..1025339 (-) 411 WP_001278301.1 HIT family protein -
  DV119_RS05660 pptA 1025407..1026138 (+) 732 WP_050221198.1 ABC transporter ATP-binding protein Regulator
  DV119_RS05665 pptB 1026135..1027184 (+) 1050 WP_050221199.1 ABC transporter permease Regulator
  DV119_RS05670 - 1027246..1027575 (-) 330 WP_000132585.1 hypothetical protein -
  DV119_RS05675 comE/blpR 1027871..1028608 (+) 738 WP_050221200.1 response regulator transcription factor Regulator
  DV119_RS05680 - 1028622..1029971 (+) 1350 WP_050221201.1 sensor histidine kinase -
  DV119_RS12160 - 1030205..1030396 (+) 192 WP_376738204.1 hypothetical protein -
  DV119_RS11510 - 1030597..1030761 (+) 165 WP_049511538.1 hypothetical protein -
  DV119_RS05695 - 1030758..1031162 (+) 405 WP_050221203.1 hypothetical protein -
  DV119_RS12165 - 1031433..1031709 (+) 277 Protein_1026 immunity protein -
  DV119_RS05710 - 1031792..1032175 (+) 384 WP_050221205.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40628.78 Da        Isoelectric Point: 9.9405

>NTDB_id=263041 DV119_RS05665 WP_050221199.1 1026135..1027184(+) (pptB) [Streptococcus pneumoniae strain M16808]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=263041 DV119_RS05665 WP_050221199.1 1026135..1027184(+) (pptB) [Streptococcus pneumoniae strain M16808]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGAAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGCTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment