Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   C0119_RS01720 Genome accession   NZ_CP025618
Coordinates   363931..364572 (+) Length   213 a.a.
NCBI ID   WP_108675591.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358931..369572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS01705 (C0119_05710) - 359300..360103 (+) 804 WP_004896278.1 putative RNA methyltransferase -
  C0119_RS01710 (C0119_05705) ponA 360175..362703 (-) 2529 WP_008303211.1 penicillin-binding protein PBP1a -
  C0119_RS01715 (C0119_05700) pilM 362873..363931 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  C0119_RS01720 (C0119_05695) comN 363931..364572 (+) 642 WP_108675591.1 PilN domain-containing protein Machinery gene
  C0119_RS01725 (C0119_05690) comO 364566..365285 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  C0119_RS01730 (C0119_05685) pilP 365285..365812 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  C0119_RS01735 (C0119_05680) pilQ 365829..367992 (+) 2164 Protein_330 type IV pilus secretin PilQ -
  C0119_RS01740 (C0119_05675) aroK 368029..368565 (+) 537 WP_004810003.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23793.00 Da        Isoelectric Point: 4.7690

>NTDB_id=263042 C0119_RS01720 WP_108675591.1 363931..364572(+) (comN) [Acinetobacter schindleri strain SGAir0122]
MAKINLLPWRDELRIKRNNEFVAYCVGAFLLGVTAAGGSWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYITKFDRVGDKFTIEGKAASPNTVAELLRNLEASTWYRNAFMNAFLV
AEENKDKAPSSVIPRVEESYGTFTVTVDLDQIAQPLLSEQQPQAAAAAGGATS

Nucleotide


Download         Length: 642 bp        

>NTDB_id=263042 C0119_RS01720 WP_108675591.1 363931..364572(+) (comN) [Acinetobacter schindleri strain SGAir0122]
ATGGCAAAAATTAACTTACTTCCTTGGCGTGATGAGCTCAGGATAAAAAGAAATAACGAATTTGTCGCATATTGCGTCGG
GGCCTTTTTGCTAGGGGTAACAGCAGCTGGAGGAAGCTGGTTCTACTATGATCAAAAATTACAGGATCAAGAACAAGCCA
ACCAACTCATCATCAGTACCAATCAGAATCTGGATGTACAGCTAAAATCTCTGGAAGGTTTACAGGAACAGCGTAATGCG
ATTGTGGAACGCATGAAACTGATTCAAGGTTTACAAACCCAGCGTCCAATTGCCGTACATCTTATTGACGAGATTGTACG
TGTGACACCAAGTGATATGTATATCACCAAGTTTGACCGTGTCGGTGATAAGTTCACCATTGAAGGTAAAGCAGCAAGTC
CAAATACGGTTGCAGAATTATTGCGTAATCTCGAAGCTTCTACCTGGTACCGTAATGCTTTCATGAATGCATTCCTGGTG
GCGGAAGAGAACAAGGACAAGGCGCCAAGCTCTGTTATTCCACGTGTTGAAGAATCTTATGGCACATTTACAGTGACAGT
GGATCTGGACCAGATTGCTCAACCGTTGCTTTCAGAACAACAGCCGCAAGCAGCTGCAGCAGCAGGAGGGGCGACATCAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

69.378

98.122

0.681
  pilN Acinetobacter baumannii D1279779

66.509

99.531

0.662

Multiple sequence alignment