Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   DV119_RS05895 Genome accession   NZ_CP031245
Coordinates   1070215..1070481 (+) Length   88 a.a.
NCBI ID   WP_050072227.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065215..1075481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS05875 - 1065479..1065988 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  DV119_RS05880 pheT 1066065..1068470 (+) 2406 WP_050072972.1 phenylalanine--tRNA ligase subunit beta -
  DV119_RS05885 - 1068538..1069539 (-) 1002 WP_050072975.1 endonuclease/exonuclease/phosphatase family protein -
  DV119_RS05890 - 1069687..1070090 (+) 404 Protein_1064 helix-turn-helix domain-containing protein -
  DV119_RS05895 HI0659 1070215..1070481 (+) 267 WP_050072227.1 helix-turn-helix domain-containing protein Machinery gene
  DV119_RS05900 metE 1070742..1072991 (+) 2250 WP_050072228.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  DV119_RS05905 metF 1073055..1073921 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9592.07 Da        Isoelectric Point: 4.4893

>NTDB_id=263043 DV119_RS05895 WP_050072227.1 1070215..1070481(+) (HI0659) [Streptococcus pneumoniae strain M16808]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARTETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=263043 DV119_RS05895 WP_050072227.1 1070215..1070481(+) (HI0659) [Streptococcus pneumoniae strain M16808]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGACGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment