Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   TERY_RS15575 Genome accession   NC_008312
Coordinates   4981509..4981874 (-) Length   121 a.a.
NCBI ID   WP_011612707.1    Uniprot ID   Q10ZG2
Organism   Trichodesmium erythraeum IMS101     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4976509..4986874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERY_RS28320 - 4976649..4976961 (+) 313 Protein_3405 DUF3470 domain-containing protein -
  TERY_RS15565 (Tery_3246) - 4977493..4980810 (-) 3318 WP_011612705.1 methyl-accepting chemotaxis protein -
  TERY_RS15570 (Tery_3247) - 4980978..4981496 (-) 519 WP_011612706.1 chemotaxis protein CheW -
  TERY_RS15575 (Tery_3248) pilH 4981509..4981874 (-) 366 WP_011612707.1 response regulator Machinery gene
  TERY_RS15580 (Tery_3249) - 4982580..4983797 (-) 1218 WP_011612708.1 DUF4388 domain-containing protein -
  TERY_RS15585 (Tery_3250) hmpF 4984322..4986061 (+) 1740 WP_011612709.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13517.81 Da        Isoelectric Point: 9.5215

>NTDB_id=26225 TERY_RS15575 WP_011612707.1 4981509..4981874(-) (pilH) [Trichodesmium erythraeum IMS101]
MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNGYEVCRRIKSDPQTKHIPVVM
CSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=26225 TERY_RS15575 WP_011612707.1 4981509..4981874(-) (pilH) [Trichodesmium erythraeum IMS101]
ATGAGCAAAGTTCTAGTGGTAGAAGATAGCGTTACCCAAAGAGAAATGATATCACAGCTTCTCAAAAATAGTGGATTAGC
AGTTACCGTTGCTAATGACGGAGTAGAAGCTTTGGGGCGACTAAAAAATACTAAACCCGATATAGTAGTATTAGATATTG
TGATGCCAAAAATGAATGGTTATGAAGTCTGTAGGAGAATAAAATCCGATCCTCAAACTAAGCATATTCCAGTAGTTATG
TGTTCTTCAAAGGGAGAAGAGTTTGATCGTTACTGGGGCTTAAAACAAGGGGCAGATGCCTATATTGCTAAACCATTCCA
GCCCACAGAACTAGTGGGAACAGTTAAGCAATTATTAAGACGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q10ZG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.833

99.174

0.752
  pilG Acinetobacter baumannii strain A118

41.739

95.041

0.397
  micA Streptococcus pneumoniae Cp1015

39.669

100

0.397
  vicR Streptococcus mutans UA159

38.017

100

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372

Multiple sequence alignment