Detailed information NTG0026163

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABO_RS13650
• Genome accession: NC_008260
• Coordinates: 3019041..3020162 (+)
• Length: 373 a.a.
• NCBI ID: WP_011589942.1
• Uniprot ID: A0AAD1F0I1
• Organism: Alcanivorax borkumensis SK2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3014041..3025162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABO_RS13630 (ABO_2667)	-	3015522..3016070 (-)	549	WP_011589938.1	YggT family protein	-
ABO_RS13635 (ABO_2668)	proC	3016291..3017100 (-)	810	WP_011589939.1	pyrroline-5-carboxylate reductase	-
ABO_RS13640 (ABO_2669)	-	3017121..3017810 (-)	690	WP_041705640.1	YggS family pyridoxal phosphate-dependent enzyme	-
ABO_RS13645 (ABO_2670)	pilT	3017946..3018980 (+)	1035	WP_011589941.1	type IV pilus twitching motility protein PilT	Machinery gene
ABO_RS13650 (ABO_2671)	pilU	3019041..3020162 (+)	1122	WP_011589942.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABO_RS13655 (ABO_2672)	-	3020326..3020532 (-)	207	WP_035460127.1	SlyX family protein	-
ABO_RS13660 (ABO_2673)	-	3020913..3021467 (+)	555	WP_041705170.1	TMEM165/GDT1 family protein	-
ABO_RS13665 (ABO_2674)	-	3021609..3022148 (+)	540	WP_011589945.1	YaeQ family protein	-
ABO_RS13670 (ABO_2675)	-	3022255..3022818 (+)	564	WP_011589946.1	HdeD family acid-resistance protein	-
ABO_RS13675 (ABO_2676)	-	3022858..3024042 (+)	1185	WP_011589947.1	hypothetical protein	-
ABO_RS13680 (ABO_2677)	arsH	3024132..3024842 (-)	711	WP_035459839.1	arsenical resistance protein ArsH	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 41311.59 Da
• Isoelectric Point: 6.7783

>NTDB_id=26163 ABO_RS13650 WP_011589942.1 3019041..3020162(+) (pilU) [Alcanivorax borkumensis SK2]
MEFEELLKLMVQKGGSDLFITAGVPPSMKINGKILPVTKSALTPDITRDIVFGVMTEQQRKEFVANHECNFAISARGVGR
FRVSAFYQRNLVGMVLRRIETKIPNVDDLRLPPVIKELAMTKRGLVIFVGATGTGKSTSLASMIGHRNKNSKGHIITIED
PIEFIHQHQGCIVTQREVGIDTESFDVALKNTLRQAPDVILIGEIRTPDTMDKAIAFAETGHLCLATLHANNANQALDRI
IHFFPADRHGQLWMDLSLNLKGIVAQQLIPTPDGKGRRAAIEVLLGTPLVQDHIRKGEVHQIKQLMSKSREQGMQTFDQA
LYDLYSAGEITYEDAMLHADSPNDLRLMIKLGNETDASSLDVATRGLSIEDTE

Nucleotide

• Length: 1122 bp

>NTDB_id=26163 ABO_RS13650 WP_011589942.1 3019041..3020162(+) (pilU) [Alcanivorax borkumensis SK2]
ATGGAATTCGAAGAGCTTCTCAAGTTGATGGTACAGAAAGGTGGGTCAGATCTGTTTATCACCGCTGGCGTACCCCCGAG
TATGAAAATCAACGGCAAGATCCTGCCGGTGACCAAAAGTGCGCTGACCCCGGATATAACACGGGACATCGTGTTTGGCG
TCATGACCGAGCAGCAGCGCAAGGAGTTCGTGGCCAACCATGAGTGTAACTTTGCCATCTCCGCCCGTGGCGTGGGCCGT
TTCCGGGTCTCTGCGTTCTATCAGCGCAACCTGGTGGGCATGGTACTGCGCCGCATCGAAACCAAAATCCCTAACGTGGA
CGACCTGCGCTTGCCGCCAGTGATAAAGGAACTGGCTATGACCAAGCGTGGCTTAGTGATTTTCGTGGGCGCTACCGGTA
CCGGTAAATCCACCTCACTGGCGTCCATGATTGGCCATCGCAACAAGAACTCCAAGGGTCACATCATCACCATTGAAGAC
CCCATCGAATTTATCCACCAGCACCAGGGCTGTATCGTCACCCAGCGTGAGGTGGGCATTGATACCGAATCCTTCGACGT
GGCCCTGAAGAACACCCTGCGCCAGGCACCGGATGTGATTCTGATTGGGGAGATCCGCACCCCTGACACCATGGACAAGG
CCATTGCTTTCGCCGAAACCGGGCACCTGTGTCTAGCTACCTTACACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATTCACTTCTTCCCGGCGGATCGTCATGGCCAGCTGTGGATGGATCTATCCCTGAACCTGAAAGGCATCGTCGCCCAGCA
ACTGATCCCCACCCCAGATGGTAAAGGCCGACGCGCGGCCATCGAAGTGCTTCTAGGCACACCGCTGGTACAAGACCATA
TCCGCAAGGGCGAAGTGCATCAGATCAAGCAGCTGATGAGCAAATCCCGGGAGCAGGGTATGCAGACTTTCGATCAAGCC
CTTTACGACCTGTACTCCGCCGGTGAAATCACCTACGAAGACGCCATGCTCCACGCCGACTCGCCCAACGACTTACGCCT
GATGATTAAGCTCGGCAACGAAACCGACGCCTCCAGTTTAGACGTGGCCACGCGGGGTCTAAGCATCGAGGATACGGAGT
AA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (115-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	78.919	99.196	0.783
pilU	Acinetobacter baylyi ADP1	68.067	95.71	0.651
pilU	Vibrio cholerae strain A1552	54.318	96.247	0.523
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.737	95.71	0.399
pilT	Legionella pneumophila strain Lp02	40.299	89.812	0.362
pilT	Legionella pneumophila strain ERS1305867	40.299	89.812	0.362