Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   SPSF3K_RS09640 Genome accession   NZ_CP025420
Coordinates   1909352..1911091 (-) Length   579 a.a.
NCBI ID   WP_004234985.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904352..1916091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS09615 (SPSF3K_01951) - 1905084..1905437 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  SPSF3K_RS09620 (SPSF3K_01952) - 1905437..1906837 (-) 1401 WP_003104279.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SPSF3K_RS09625 (SPSF3K_01953) - 1906871..1907512 (-) 642 WP_003107492.1 response regulator transcription factor -
  SPSF3K_RS09630 (SPSF3K_01954) - 1907505..1908509 (-) 1005 WP_003107494.1 sensor histidine kinase -
  SPSF3K_RS09635 (SPSF3K_01955) liaF 1908506..1909201 (-) 696 WP_037620823.1 cell wall-active antibiotics response protein LiaF -
  SPSF3K_RS09640 (SPSF3K_01956) pknB 1909352..1911091 (-) 1740 WP_004234985.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  SPSF3K_RS09645 (SPSF3K_01957) - 1911091..1911831 (-) 741 WP_004234987.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  SPSF3K_RS09650 (SPSF3K_01958) rsmB 1911869..1913191 (-) 1323 WP_003105444.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  SPSF3K_RS09655 (SPSF3K_01959) fmt 1913181..1914116 (-) 936 WP_004234990.1 methionyl-tRNA formyltransferase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 63722.39 Da        Isoelectric Point: 6.5191

>NTDB_id=261188 SPSF3K_RS09640 WP_004234985.1 1909352..1911091(-) (pknB) [Streptococcus parauberis strain SPOF3K]
MIQIGKLFAGRYRILKSIGRGGMADVYLANDLILDNEDVAIKVLRTNYQTDQVAVARFQREARAMAELNHPNIVAIRDIG
EEDGQQFLVMEYVDGFDLKRFIQENAPIPNEQVVRIMEEVLSAMTLAHQKGIVHRDLKPQNILLTKDGVVKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGHIPYDGDSAVTIALQHFQKPLPSIIEENKGVP
QALENVVIKATAKRLSDRYATTFDMSRDLMTALSYNRSRERKLVFHDVESTKPLPKVTPVPVTQTKSSVAPQTSGSEIHD
DAVTPQKTKKKRGRLLGTLLKILFALFVVLVAVFAFLVLTKPSTVKVPNVNGTTLSVAKKELTDLGFQVGQIHKMENTAV
DSGKVIKTDPKAGTERREGARIDLFVSTGQPKVKKKSKDKVLMPDFTNMTYKDVLNMLTNEYGIHPNRIVAYYQDAPNPE
NYSKVSSPKDSQLVMGQYPIVGTYYIISDKEDIELYLSPDSGDNTTVFSSTPTSTSSSSEEETSTSTETSTSSESTTSSS
SSDATTTDSTTSDTSTTTP

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=261188 SPSF3K_RS09640 WP_004234985.1 1909352..1911091(-) (pknB) [Streptococcus parauberis strain SPOF3K]
ATGATACAGATTGGCAAATTATTTGCTGGTCGTTATCGTATCCTGAAGTCTATTGGCCGCGGTGGTATGGCTGATGTATA
TTTAGCCAATGATTTGATATTAGATAATGAAGATGTTGCAATAAAAGTTTTGCGAACCAATTATCAGACGGATCAAGTAG
CAGTAGCTCGTTTCCAACGGGAAGCGCGTGCTATGGCTGAATTAAATCATCCAAACATCGTTGCAATTAGAGATATAGGG
GAAGAGGACGGACAGCAGTTCCTAGTAATGGAATATGTTGATGGATTTGATCTTAAACGATTTATCCAGGAAAATGCACC
AATTCCAAATGAACAAGTTGTTAGAATCATGGAAGAAGTTTTATCTGCTATGACTTTAGCCCATCAAAAAGGGATTGTTC
ATAGAGATTTAAAACCTCAAAATATCCTGCTAACTAAGGATGGAGTTGTCAAAGTTACAGACTTTGGGATCGCAGTTGCC
TTTGCTGAGACAAGTTTAACTCAGACAAATTCAATGCTAGGTAGTGTTCACTATCTTTCACCTGAACAAGCAAGAGGTTC
AAAAGCGACTATCCAAAGTGATATTTATGCCATGGGTATTATGTTGTTTGAAATGTTAACTGGTCATATTCCTTATGACG
GGGATAGTGCCGTAACAATTGCTTTACAACATTTCCAAAAACCACTGCCTTCAATTATTGAAGAAAATAAAGGTGTACCG
CAGGCTCTTGAGAATGTTGTTATTAAAGCGACAGCTAAGCGTTTAAGTGATCGATATGCGACTACTTTTGATATGAGCAG
AGATTTGATGACAGCGCTAAGCTATAATCGAAGCCGTGAACGGAAGTTAGTCTTCCATGATGTTGAAAGTACCAAGCCAC
TACCTAAAGTTACACCTGTTCCGGTTACGCAAACCAAATCATCTGTAGCACCTCAAACATCTGGATCTGAAATCCATGAT
GATGCGGTTACACCTCAAAAAACAAAGAAAAAACGTGGACGTCTTTTGGGAACTTTACTCAAAATTTTATTCGCCCTCTT
TGTTGTTTTGGTTGCTGTCTTTGCCTTTTTAGTCCTAACGAAGCCATCTACGGTGAAGGTTCCAAATGTGAATGGAACTA
CATTGAGTGTGGCCAAAAAAGAATTGACTGATTTAGGTTTCCAAGTTGGTCAGATTCACAAAATGGAAAATACAGCAGTT
GATTCTGGTAAGGTCATTAAAACAGATCCTAAGGCAGGCACTGAGCGCCGTGAAGGGGCTCGGATTGATCTCTTTGTTTC
AACTGGACAACCTAAAGTTAAGAAGAAAAGTAAAGATAAAGTGTTAATGCCTGATTTTACGAATATGACTTACAAAGATG
TCCTTAATATGTTAACAAATGAGTATGGTATTCATCCAAATCGAATTGTTGCCTATTATCAAGATGCTCCGAATCCAGAA
AATTATTCCAAGGTAAGCTCACCAAAAGATTCACAACTTGTTATGGGACAATATCCAATAGTTGGTACTTATTACATTAT
TTCAGATAAGGAAGATATTGAACTTTATCTAAGTCCAGATTCTGGAGATAATACAACTGTATTCTCATCAACACCAACAT
CGACATCAAGTTCAAGTGAAGAGGAAACAAGTACAAGCACAGAAACTTCTACAAGCTCTGAATCAACAACAAGTTCAAGT
AGTAGTGATGCAACAACTACTGATTCAACGACTTCGGATACAAGTACTACTACACCTTAA

Domains

Predicted by InterproScan.

PASTA domain (PASTA)

(441-518)

PASTA domain (PASTA)

(365-428)

Protein kinase domain (Pkinase)

(12-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

60.808

98.273

0.598
  stkP/pknB Streptococcus salivarius strain HSISS4

66.32

83.074

0.551
  stkP Streptococcus pneumoniae TIGR4

61.872

75.648

0.468
  stkP Streptococcus pneumoniae D39

61.644

75.648

0.466
  stkP Streptococcus pneumoniae R6

61.644

75.648

0.466
  stkP Streptococcus pneumoniae Rx1

61.416

75.648

0.465

Multiple sequence alignment