Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CXR48_RS16695 Genome accession   NZ_CP025341
Coordinates   3396345..3397034 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391345..3402034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS16660 fliW 3391436..3391867 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  CXR48_RS16665 - 3391897..3392466 (-) 570 WP_024085861.1 DUF6470 family protein -
  CXR48_RS16670 flgL 3392557..3393474 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  CXR48_RS16675 flgK 3393486..3395003 (-) 1518 WP_101312086.1 flagellar hook-associated protein FlgK -
  CXR48_RS16680 - 3395019..3395501 (-) 483 WP_024085863.1 flagellar protein FlgN -
  CXR48_RS16685 flgM 3395516..3395782 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CXR48_RS16690 - 3395852..3396271 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  CXR48_RS16695 comFC 3396345..3397034 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  CXR48_RS16700 - 3397040..3397324 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  CXR48_RS16705 comFA 3397382..3398767 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  CXR48_RS16710 - 3398875..3399723 (-) 849 WP_024085866.1 DegV family protein -
  CXR48_RS16715 degU 3399821..3400510 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CXR48_RS16720 degS 3400587..3401750 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=260195 CXR48_RS16695 WP_196616643.1 3396345..3397034(-) (comFC) [Bacillus velezensis strain CMT-6]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=260195 CXR48_RS16695 WP_196616643.1 3396345..3397034(-) (comFC) [Bacillus velezensis strain CMT-6]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment