Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CXL14_RS06250 Genome accession   NZ_CP025258
Coordinates   1219911..1220600 (+) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus sp. SJ-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214911..1225600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS06225 degS 1215195..1216358 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CXL14_RS06230 degU 1216435..1217124 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CXL14_RS06235 - 1217222..1218070 (+) 849 WP_003151387.1 DegV family protein -
  CXL14_RS06240 comFA 1218178..1219563 (+) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  CXL14_RS06245 - 1219621..1219905 (+) 285 WP_014419011.1 competence protein ComFB -
  CXL14_RS06250 comFC 1219911..1220600 (+) 690 WP_197535984.1 ComF family protein Machinery gene
  CXL14_RS06255 - 1220674..1221093 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CXL14_RS06260 flgM 1221163..1221429 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CXL14_RS06265 - 1221444..1221926 (+) 483 WP_003151394.1 flagellar protein FlgN -
  CXL14_RS06270 flgK 1221942..1223459 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CXL14_RS06275 flgL 1223471..1224388 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  CXL14_RS06280 - 1224479..1225048 (+) 570 WP_003151397.1 DUF6470 family protein -
  CXL14_RS06285 fliW 1225078..1225509 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=259539 CXL14_RS06250 WP_197535984.1 1219911..1220600(+) (comFC) [Bacillus sp. SJ-10]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=259539 CXL14_RS06250 WP_197535984.1 1219911..1220600(+) (comFC) [Bacillus sp. SJ-10]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment