Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MGAS9429_RS04905 Genome accession   NC_008021
Coordinates   958167..959003 (+) Length   278 a.a.
NCBI ID   WP_002989770.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS9429     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 953167..964003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS9429_RS04875 (MGAS9429_Spy0996) - 953649..954089 (+) 441 WP_024623381.1 hypothetical protein -
  MGAS9429_RS04880 (MGAS9429_Spy0997) - 954139..955050 (-) 912 WP_002989777.1 diacylglycerol/lipid kinase family protein -
  MGAS9429_RS04885 (MGAS9429_Spy0998) trhA 955167..955817 (-) 651 WP_002984629.1 PAQR family membrane homeostasis protein TrhA -
  MGAS9429_RS04890 (MGAS9429_Spy0999) - 955814..956254 (-) 441 WP_002989774.1 DUF1836 domain-containing protein -
  MGAS9429_RS04895 (MGAS9429_Spy1000) ylqF 956473..957321 (+) 849 WP_002984625.1 ribosome biogenesis GTPase YlqF -
  MGAS9429_RS04900 (MGAS9429_Spy1001) - 957311..958102 (+) 792 WP_002989771.1 ribonuclease HII -
  MGAS9429_RS04905 (MGAS9429_Spy1002) dprA 958167..959003 (+) 837 WP_002989770.1 DNA-processing protein DprA Machinery gene
  MGAS9429_RS04910 (MGAS9429_Spy1003) topA 959110..961239 (+) 2130 WP_002989768.1 type I DNA topoisomerase -
  MGAS9429_RS09755 - 961314..962171 (-) 858 Protein_939 LysR family transcriptional regulator -
  MGAS9429_RS04920 (MGAS9429_Spy1006) - 962211..962777 (+) 567 Protein_940 PTS sugar transporter subunit IIC -
  MGAS9429_RS04925 (MGAS9429_Spy1007) - 962792..963784 (+) 993 WP_002989762.1 D-lactate dehydrogenase -

Sequence


Protein


Download         Length: 278 a.a.        Molecular weight: 30956.84 Da        Isoelectric Point: 8.5841

>NTDB_id=25851 MGAS9429_RS04905 WP_002989770.1 958167..959003(+) (dprA) [Streptococcus pyogenes MGAS9429]
MNHFELYKLKKAGLTNKNILNILDYQEHQEKSLSLRDMAVVSGCKHPSHFIEAYKQLDIQNLKIEFKQFPSISILDKHYP
MALKEIYNPPVLLFFQGNLDLLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHLACLKNGGQTI
AIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALSYHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGR
DIFAVPGNILDGKSEGCLQLIKEGATCVTSGMDILSEY

Nucleotide


Download         Length: 837 bp        

>NTDB_id=25851 MGAS9429_RS04905 WP_002989770.1 958167..959003(+) (dprA) [Streptococcus pyogenes MGAS9429]
GTGAATCATTTTGAACTTTATAAGCTAAAGAAAGCTGGACTGACTAATAAAAACATTCTCAATATTCTTGACTACCAAGA
ACACCAGGAAAAATCGTTGTCACTTCGAGATATGGCCGTTGTTTCTGGTTGTAAGCATCCGTCTCACTTTATAGAAGCCT
ATAAGCAGTTAGATATTCAAAATTTAAAAATAGAATTTAAACAGTTTCCTAGTATTTCTATCTTAGATAAGCATTACCCA
ATGGCATTGAAAGAAATATACAATCCACCTGTCCTCTTGTTTTTTCAGGGAAATTTAGACCTTCTTGAGAAACCTAAATT
AGCCATTGTCGGCTCCAGACGCTCAAGCGATACCGGAGTAAAGTCTGTCCGTAAAATTCTTAAAGAACTCGGGAACCGTT
TTGTGATTGTTAGCGGACTTGCTCGAGGTATCGACACTAGTGCTCATTTAGCCTGCCTTAAAAATGGGGGACAAACCATC
GCTATTATTGGAACAGGGTTGGATCGCTTTTACCCTAAAGAAAATAGGGAGTTGCAAACTTTCTTAGGGAAAAATCATCT
TGTGCTAACAGAATACGGTCCAGGAGAAGAAGCTTTATCTTATCACTTTCCAGAACGGAATCGTATTATCGCAGGCCTTA
GCCGAGGTATTCTTGTCGTTGAAGCAAAAAATCGTTCAGGTTCCTTGATTACTTGTCAAATTGGGATAGAAGAAGGCCGA
GACATTTTTGCTGTCCCAGGAAACATTTTGGACGGGAAATCCGAAGGTTGCCTTCAGTTAATTAAAGAGGGAGCAACATG
CGTCACGTCGGGCATGGATATCCTTTCAGAGTACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

67.626

100

0.676

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae D39

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae R6

60.791

100

0.608

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis SK321

60.791

100

0.608

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

60.432

100

0.604

  dprA Lactococcus lactis subsp. cremoris KW2

57.194

100

0.572

  dprA Legionella pneumophila strain ERS1305867

42.857

85.612

0.367


Multiple sequence alignment