Detailed information NTG0257421

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: CWQ20_RS01325
• Genome accession: NZ_CP025029
• Coordinates: 213385..213798 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SGEHI2015-25
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 208385..218798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWQ20_RS01300 (CWQ20_01300)	-	210638..211003 (+)	366	WP_000285373.1	DUF1033 family protein	-
CWQ20_RS01310 (CWQ20_01310)	comYA	211176..212147 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
CWQ20_RS01315 (CWQ20_01315)	comYB	212041..213084 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
CWQ20_RS01320 (CWQ20_01320)	comGC/cglC	213081..213410 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
CWQ20_RS01325 (CWQ20_01325)	comYD	213385..213798 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
CWQ20_RS01330 (CWQ20_01330)	comGE	213770..214069 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
CWQ20_RS01335 (CWQ20_01335)	comGF	214023..214484 (+)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
CWQ20_RS01340 (CWQ20_01340)	comGG	214462..214833 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
CWQ20_RS01345 (CWQ20_01345)	comYH	214948..215922 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
CWQ20_RS01350 (CWQ20_01350)	-	215954..217147 (+)	1194	WP_000047534.1	acetate kinase	-
CWQ20_RS01355 (CWQ20_01355)	-	217299..217505 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
CWQ20_RS11110 (CWQ20_01360)	-	217573..217701 (+)	129	WP_014959723.1	hypothetical protein	-
CWQ20_RS01365 (CWQ20_01365)	-	217742..218197 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=257421 CWQ20_RS01325 WP_000244261.1 213385..213798(+) (comYD) [Streptococcus agalactiae strain SGEHI2015-25]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=257421 CWQ20_RS01325 WP_000244261.1 213385..213798(+) (comYD) [Streptococcus agalactiae strain SGEHI2015-25]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394