Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BXE_RS01335 Genome accession   NC_007951
Coordinates   304789..306378 (-) Length   529 a.a.
NCBI ID   WP_011486648.1    Uniprot ID   Q146D1
Organism   Paraburkholderia xenovorans LB400     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299789..311378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXE_RS01320 (Bxe_A4195) - 301581..302933 (+) 1353 WP_011486645.1 sigma-54-dependent transcriptional regulator -
  BXE_RS01325 (Bxe_A4194) - 303045..303575 (-) 531 WP_011486646.1 TlpA disulfide reductase family protein -
  BXE_RS01330 (Bxe_A4193) - 303838..304446 (+) 609 WP_011486647.1 hypothetical protein -
  BXE_RS01335 (Bxe_A4192) comM 304789..306378 (-) 1590 WP_011486648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BXE_RS01340 (Bxe_A4191) - 306498..306752 (-) 255 WP_011486649.1 accessory factor UbiK family protein -
  BXE_RS01345 (Bxe_A4190) - 307164..307502 (+) 339 WP_006048089.1 P-II family nitrogen regulator -
  BXE_RS01350 (Bxe_A4189) - 307547..309046 (+) 1500 WP_011486650.1 ammonium transporter -
  BXE_RS01355 (Bxe_A4188) gshA 309285..310574 (+) 1290 WP_011486651.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 55409.35 Da        Isoelectric Point: 7.2091

>NTDB_id=25688 BXE_RS01335 WP_011486648.1 304789..306378(-) (comM) [Paraburkholderia xenovorans LB400]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCNFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAESLLHREFAGELSLTGALRPMRGAFAMACGTARGGVSHGGAASGISGELAASEPAAHPVPQL
YLPAASAAEAALVPGVDVYGAADLPSLCAHLADAPDARLHPLAAPELADCASAADPDMGDVIGQRGARRALEVAAAGGHH
VLLVGPPGAGKSMLAARLPGLLPPMTDDEALSSAALLSASRAGFTPSQWRRRPFRAPHHSSSAAALVGGRNPPQPGEITL
AHLGVLFLDELPEFDRAVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPQGRCRCTPEIAARYLRK
LSGPLLDRIDIQLEIPALTPAELSARSTAVGETSAAIAARVNRARERQLSRQGKTNRELGGREVDEMCQPDAAGEILLRE
AGERFGWSARAYYRVLKVARTIADLAGAPMPSAAQIAEAIQYRRAFGSV

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=25688 BXE_RS01335 WP_011486648.1 304789..306378(-) (comM) [Paraburkholderia xenovorans LB400]
ATGTCGCTTGCCGTGGTGCGCAGTCGCGCGCCGGCCGCTGGCCGCGCGCCCGAAGTAACCGTCGAGGTCCACCTCGCGAA
CGGATTACCCTCTTTTTCGATTGTCGGGCTGCCTGATCTGGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCGGCATTGC
AGAACTGCAATTTCGACTTCCCTGTCCGGCGCATCACCGTCAATCTCGCACCCGCCGATTTGCCGAAGGAATCCGGCCGC
TTCGATCTGCCGATCGCTTTGGGCATTCTCGCGGCGAGCGGCCAGATTCCCGCCGAGTCCTTGCTGCATCGCGAATTCGC
GGGCGAGCTGTCGTTGACCGGCGCGCTCAGGCCGATGCGCGGTGCTTTCGCAATGGCCTGCGGAACTGCACGCGGCGGCG
TGTCTCACGGCGGCGCAGCTTCTGGAATTTCAGGCGAGCTCGCTGCCAGCGAGCCAGCTGCACATCCTGTGCCACAGCTC
TACCTGCCCGCCGCGAGCGCGGCGGAAGCGGCGCTCGTGCCCGGCGTCGACGTCTACGGCGCCGCCGATCTGCCTTCGCT
ATGCGCTCACCTGGCGGATGCGCCCGACGCGCGGCTCCATCCGCTTGCCGCGCCGGAACTCGCCGACTGCGCAAGCGCCG
CCGATCCGGATATGGGCGACGTGATCGGTCAGCGCGGCGCGCGGCGGGCACTTGAAGTCGCCGCGGCGGGCGGCCATCAC
GTGTTGCTGGTCGGGCCGCCCGGTGCGGGTAAATCGATGCTCGCCGCGCGCCTGCCCGGCCTCCTGCCGCCCATGACCGA
CGACGAAGCGCTCAGCTCCGCCGCTCTCCTGTCCGCCAGCCGGGCCGGTTTCACGCCTTCGCAGTGGCGGCGGCGGCCGT
TTCGCGCCCCGCATCATTCGTCGAGCGCCGCGGCGCTGGTGGGCGGGCGCAATCCGCCGCAGCCCGGTGAAATTACGCTG
GCGCATCTGGGCGTTCTGTTTCTCGACGAGCTCCCCGAATTCGATCGGGCCGTGCTCGAAACGCTGCGTGAACCGCTCGA
AGCCGGCCGCATCACGATTTCACGCGCCGCCCTGCAGGCGGATTTCCCGGCCGCGTGCCAGCTGATCGCCGCCATGAATC
CGTGCCCATGCGGCTGGCGCGGCGATCCCCAAGGCCGCTGCCGCTGCACACCCGAGATCGCGGCACGCTACCTGCGCAAG
CTTTCCGGGCCCCTACTCGACCGGATCGATATCCAGCTGGAGATTCCCGCACTCACGCCGGCGGAACTGTCGGCCCGTTC
GACAGCCGTTGGGGAGACAAGCGCGGCCATTGCCGCGCGCGTGAACCGCGCTCGCGAGCGTCAATTGAGCCGTCAGGGCA
AAACCAACCGGGAATTAGGAGGACGGGAAGTGGACGAGATGTGCCAGCCCGACGCCGCGGGCGAAATATTGCTGCGTGAA
GCCGGAGAGCGTTTCGGCTGGTCGGCGCGCGCGTATTACCGGGTTCTGAAGGTGGCGCGCACTATCGCCGACCTCGCCGG
CGCGCCCATGCCGAGCGCCGCGCAGATCGCTGAGGCGATCCAGTATCGCCGGGCTTTTGGATCGGTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-523)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(217-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q146D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

48.948

98.866

0.484
  comM Vibrio cholerae strain A1552

48.664

99.055

0.482
  comM Legionella pneumophila str. Paris

46.768

99.433

0.465
  comM Legionella pneumophila strain ERS1305867

46.768

99.433

0.465
  comM Haemophilus influenzae Rd KW20

46.756

99.055

0.463
  comM Glaesserella parasuis strain SC1401

46.565

99.055

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.048

99.244

0.427

Multiple sequence alignment